Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00143 ATGCGGGGACAACATTCTCACCCACTCAAGTCGGGTCCCGCCGGACCCGATGACGAAAACGAACCAGTTCGCTCTTATATCGCCGGAATGAACATTCCCTTAAGCGCCGGAATTCGGAAGAAGGGAACTGGAGTCCGACCATGGCTACTCCTGGACTCGACCGGCGGAGCTCAGGTGGTTGAGGCCGGAAAACATGCGATTATGCGGCGGACCGGTCTGCCGGCGCGGGACCTTCGGATTCTCGATCCGTTGCTCTCGTATCCATCTACGGTTCTTGGCCGTGAGAAAGCGATTGTGATCAATTTGGAGCACATCAAAGCAATTATCACTGCTCAAGATGTGTTCGTGTTGAATGCTAGGGATCCGTCTGTAACCCCCTTTGTGGATGAGCTTCAAAGGCGGGTATTGCGGCACCATCAAGCCACTAAGGCCTCTCAGGAGGGCGTTAGCGATGATTCTAATTGGAGGAATCTGTATGACTTAGAGGAGCCTAGATCAAGGACTCAAAGTCCTCCTTCATACCAAGGATTTCCACAGGCTGAAGAGGAGGAGGGGAAGGAAAGCATGAAACAAGGTCTTGAAAATCGGGAGGGATTGAAGGTTCTTCCTTTTGAGTTTGTTGCTTTGGAGGCATGCCTTGAAGCTGCTTGCAGTTGCTTAGAAAGCGAAGCAGATACATTGGAGCTAGAGGCTCACCCGGCTTTGGATAAGCTGACTTCTAAGATTAGTACTCTCAATTTGGAACGAGTGCGTCAGATCAAAAGTCGACTGGTTGCAATAACTGGACGAGTTCAAAAGGTGCGGGACGAATTAGAACACTTGTTAGATGATGATGAGGATATGGCTGAGATGTACTTAACAGAGAAAATGGTTCAGCAACAACTTGAGAACTCTTCCACTTCCTCAATTCCTGAGAGAGATGACATGGAAGAAGACGATCAGCAATTAGGCAAAGATGACAGGCACGAGTCATGTCTTGTGTCACCTTAA 990 49.19 MRGQHSHPLKSGPAGPDDENEPVRSYIAGMNIPLSAGIRKKGTGVRPWLLLDSTGGAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTVLGREKAIVINLEHIKAIITAQDVFVLNARDPSVTPFVDELQRRVLRHHQATKASQEGVSDDSNWRNLYDLEEPRSRTQSPPSYQGFPQAEEEEGKESMKQGLENREGLKVLPFEFVALEACLEAACSCLESEADTLELEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKMVQQQLENSSTSSIPERDDMEEDDQQLGKDDRHESCLVSP* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 967409 969430 - Chy1G001430.1 Chy01g00143 217324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00143 329 Coils Coil 210 230 - -
Chy01g00143 329 MobiDBLite consensus disorder prediction 315 329 - -
Chy01g00143 329 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 24 312 - -
Chy01g00143 329 Gene3D - 36 119 - -
Chy01g00143 329 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 24 312 IPR039204 -
Chy01g00143 329 Gene3D Magnesium transport protein CorA, transmembrane region 179 322 - -
Chy01g00143 329 MobiDBLite consensus disorder prediction 1 23 - -
Chy01g00143 329 MobiDBLite consensus disorder prediction 162 191 - -
Chy01g00143 329 MobiDBLite consensus disorder prediction 292 329 - -
Chy01g00143 329 CDD Mrs2_Mfm1p-like 48 311 IPR039204 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00143 - - - csv:101213978 591.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00143 Chy-Chr1:967409 Chy04g01335 Chy-Chr4:19898561 4.17E-78 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01335 . 1 426 MRS2 Gene Family AT1G16010 81.3 1.3e-191 666.0
Chy03g00716 . 1 378 MRS2 Gene Family AT1G16010 52.7 3.4e-107 385.6
Chy01g00143 . 37 298 MRS2 Gene Family AT1G16010 51.1 9.4e-57 218.0
Chy05g00362 . 1 366 MRS2 Gene Family AT5G64560 79.9 8.1e-158 553.5
Chy05g00411 . 1 370 MRS2 Gene Family AT5G64560 69.0 8.4e-131 463.8
Chy01g00143 . 1 321 MRS2 Gene Family AT3G19640 63.2 1.6e-94 343.6
Chy01g00142 . 12 183 MRS2 Gene Family AT3G19640 68.0 5.1e-56 215.7
Chy06g01142 . 59 444 MRS2 Gene Family AT3G58970 69.5 5.1e-140 494.6
Chy03g00716 . 3 378 MRS2 Gene Family AT2G03620 68.4 7.4e-136 480.7
Chy04g01335 . 13 423 MRS2 Gene Family AT2G03620 53.9 4.7e-106 381.7
Chy05g00362 . 1 328 MRS2 Gene Family AT5G09690 75.2 3.1e-126 448.4
Chy05g00411 . 1 332 MRS2 Gene Family AT5G09690 65.7 8.2e-111 397.1
Chy04g01335 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.4e-78 288.1
Chy05g00362 . 23 288 MRS2 Gene Family AT5G09720 67.6 1.1e-88 323.6
Chy05g00411 . 34 292 MRS2 Gene Family AT5G09720 62.0 3.2e-77 285.4
Chy04g01335 . 1 419 MRS2 Gene Family AT1G80900 84.7 2.3e-188 655.2
Chy03g00716 . 1 378 MRS2 Gene Family AT1G80900 54.1 3.2e-105 379.0
Chy12g00750 . 53 392 MRS2 Gene Family AT5G22830 83.5 1.3e-157 553.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005959 4 0 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00143 Chy_Chr01 FPKM 23.008928 22.682119 29.940176 28.288769 79.98468 95.609337 84.738457 13.667053 13.926579 11.431865