Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00149 ATGGATCTTCTCAACCTCTCCTGCATTCTCTTTTGTGTCTTGAGCTGCTTCACCATGCTTCCCTCTTCTCTCGCTCAAGACTCGCCCCAAGACTACGTCAATAGCCACAATCATGCTCGTGCCGCAGTTGGGGTTGGACCTATCAAATGGGACGAGAAGGTGGCAAATTATTCCAGATATTACGCCAACAAACGCATGAATGATTGTAGGTTGGTGCATTCAAATGGACCATATGGGGAGAATATTGCATGGGGTAGTCCTGACTTGAGTGGCACCAATGCAGTCAAACTTTGGGTAGATGAGAAGCAATACTACAACTATAACACCAACTCATGCGCCAGCGGGAAGGTGTGTGGCCATTATACTCAAGTGGTTTGGAAGAATTCAGTGAGACTTGGATGTGCAAAAGTGAAGTGCAGAAATAAAGGTGGCCTTTGCAAATCTAAAGAACTAGTAAATGCATGCCCCAGTTGA 474 45.78 MDLLNLSCILFCVLSCFTMLPSSLAQDSPQDYVNSHNHARAAVGVGPIKWDEKVANYSRYYANKRMNDCRLVHSNGPYGENIAWGSPDLSGTNAVKLWVDEKQYYNYNTNSCASGKVCGHYTQVVWKNSVRLGCAKVKCRNKGGLCKSKELVNACPS* 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1030655 1032527 - Chy1G001490.1 Chy01g00149 217330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00149 157 PANTHER PATHOGENESIS-RELATED PROTEIN 1 21 143 - -
Chy01g00149 157 CDD CAP_PR-1 29 144 - -
Chy01g00149 157 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 21 143 IPR001283 -
Chy01g00149 157 PRINTS Venom allergen 5 signature 23 39 IPR002413 -
Chy01g00149 157 PRINTS Venom allergen 5 signature 117 136 IPR002413 -
Chy01g00149 157 PRINTS Venom allergen 5 signature 92 107 IPR002413 -
Chy01g00149 157 Gene3D CAP 22 155 IPR035940 -
Chy01g00149 157 SMART SCP_3 27 153 IPR014044 -
Chy01g00149 157 Pfam Cysteine-rich secretory protein family 34 143 IPR014044 -
Chy01g00149 157 SUPERFAMILY PR-1-like 19 142 IPR035940 -
Chy01g00149 157 ProSitePatterns CRISP family signature 1. 119 129 IPR018244 GO:0005576
Chy01g00149 157 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Chy01g00149 157 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Chy01g00149 157 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00149 K13449 PR1; pathogenesis-related protein 1 - csv:101213016 306.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00149 Chy-Chr1:1030655 Chy01g00151 Chy-Chr1:1042178 1.84E-66 dispersed
Chy01g00147 Chy-Chr1:985513 Chy01g00149 Chy-Chr1:1030655 9.15E-29 proximal
Chy01g00149 Chy-Chr1:1030655 Chy01g00150 Chy-Chr1:1035597 1.63E-78 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g790 . Blo03g00054 Bda06g01150 . . . Bma05g00637 . Cmo19g00544 Cmo11g01430 . . . . Sed10g1935 . . Bhi05g01000 Tan02g1067 Cmetu01g2331 Lac12g0135 . . . Cla02g00703 Cam02g0736 Cec02g0750 Cco02g0776 Clacu02g0746 Cmu02g0741 Cre02g1054 . . . . Lsi03g00608 Csa07g00665 . Cme01g00137 . . . . . . . . . . . . Cma19g00535 . . . . . . . . . . . . . . . . . . . . Chy01g00149 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00149 Chy_Chr01 FPKM 0.0 0.0 5.423454 5.526975 0.261609 0.0 0.308558 0.0 0.111818 0.0