Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00150 ATGGGATTGGAATCCCTTGCTATTTATAAGAATGGAAATGTGAAATTCTATGTAGAAATGCTCTCCCTCTCCCTCTTTTGTGTCTTGACCTTTGTCATGCTTCCATCTTCTCTTGCTCAAGACTCGCCACAAGACTTCCTCAATGCCCACAACACAGCTCGTGCCCAAGTTGGGGTTGGGCCGGTTCATTGGGACGAAAGAGTAGCGAGTTTTGCTCGACAGTACGCGAACCAACGCATCAACGACTGTAGGTTAGTGCACTCTGGTGGACCTTACGGGGAGAATATTGCATGGGGCATGCCAGACTTATCAGGCACGGCTGCAGTTCAAATGTGGGTGAATGAGAAGCAGTTCTACGATTATGGCTCCAATACATGTGCGGCTGGCAGGGTGTGTGGTCATTACACTCAAGTAGTGTGGAGGAATTCAGTGAGAATTGGATGTGCCAAAGTGAGATGCACAAATAATGGTGGCACATTCATCATTTGCAACTATGACCCCCCAGGCAATTTCATAGGCCAAAAGCCATATTGA 534 47.38 MGLESLAIYKNGNVKFYVEMLSLSLFCVLTFVMLPSSLAQDSPQDFLNAHNTARAQVGVGPVHWDERVASFARQYANQRINDCRLVHSGGPYGENIAWGMPDLSGTAAVQMWVNEKQFYDYGSNTCAAGRVCGHYTQVVWRNSVRIGCAKVRCTNNGGTFIICNYDPPGNFIGQKPY* 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1035597 1042130 - Chy1G001500.1 Chy01g00150 217331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00150 177 CDD CAP_PR-1 43 177 - -
Chy01g00150 177 ProSitePatterns CRISP family signature 1. 133 143 IPR018244 GO:0005576
Chy01g00150 177 PRINTS Allergen V5/Tpx-1 family signature 62 80 IPR001283 -
Chy01g00150 177 PRINTS Allergen V5/Tpx-1 family signature 108 121 IPR001283 -
Chy01g00150 177 PRINTS Allergen V5/Tpx-1 family signature 160 173 IPR001283 -
Chy01g00150 177 PRINTS Allergen V5/Tpx-1 family signature 132 148 IPR001283 -
Chy01g00150 177 Pfam Cysteine-rich secretory protein family 47 165 IPR014044 -
Chy01g00150 177 SUPERFAMILY PR-1-like 26 177 IPR035940 -
Chy01g00150 177 Gene3D CAP 41 177 IPR035940 -
Chy01g00150 177 ProSitePatterns CRISP family signature 2. 160 171 IPR018244 GO:0005576
Chy01g00150 177 PANTHER PATHOGENESIS-RELATED PROTEIN 1 34 177 - -
Chy01g00150 177 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 34 177 IPR001283 -
Chy01g00150 177 SMART SCP_3 41 173 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00150 K13449 PR1; pathogenesis-related protein 1 - csv:101212539 307.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00150 Chy-Chr1:1035597 Chy02g01069 Chy-Chr2:7351690 5.01E-60 dispersed
Chy11g00158 Chy-Chr11:1569663 Chy01g00150 Chy-Chr1:1035597 3.46E-36 dispersed
Chy01g00149 Chy-Chr1:1030655 Chy01g00150 Chy-Chr1:1035597 1.63E-78 tandem
Chy01g00150 Chy-Chr1:1035597 Chy01g00151 Chy-Chr1:1042178 3.20E-81 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g792 . Blo03g00053 Bda06g01149 . Bpe07g00298 . Bma05g00636 Bma12g00310 Cmo19g00543 . . . . . . Cpe04g00336 Cpe15g00425 . . . . . . . Cla02g00705 Cam02g0738 Cec02g0752 Cco02g0778 Clacu02g0748 Cmu02g0742 Cre02g1056 . . . . Lsi03g00618 Csa07g00664 . Cme01g00139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00150 Cme07g02221
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00150 Chy_Chr01 FPKM 7.466882 8.212014 27.226713 25.081118 34.010593 35.777958 29.824093 34.643063 34.613892 34.256336