Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00151 ATGGCTCTCCTCATGAAGATGATCTCCCTCTCCCTCCTTTTTTTCTTGACTTCTTCCACTATATTATTCACCTCCTCTTTCGCTCAAGACTTGCCTCAAGACTTCGTCGACGCCCACAACGCTGCTCGTGCCCAAGTTGGCATCGGACCTGTCAGTTGGGATGAAACTGTAGCGAACTACGCACAACAATATGCCAACCAACACGTCAATGACTGCCAAATGGTACACTCTAACGGGCCGTATGGGGAGAATCTTGCTTGGAGCTCAGCTGATTTGTCAGGTACCAATGCAGTTCAAATGTGGGTGAATGAGAAACAGTTCTATGATTATGCCTCAAACTCGTGCGTCGGCAGTGAGTGTCGCCACTACACTCAGGTGGTGTGGAAAAACTCTGTGAAAATTGGATGCGCAAAAGTGGAATGCAATAACAATGGTGGCACCTTCATCACTTGCAACTATGATCCTAGTGGCAATTATATCGCTACCTGCCAGATGGAGCACTCCATGGAACCTTATGGTGAAAACTTAACCGAAGCATTCGAGATGACAACCACAGAATTGACAGTGAATTATTGGGGCAGTGAGAAAAAAAATTATGACCACAGATCAAACAAGCGTCCACAGATTATTGACCCATCAAAGTTGATGTTGGGTACTTCGTTGGACGTGCTTCAGGTCCTAGAGTCTTAA 690 45.94 MALLMKMISLSLLFFLTSSTILFTSSFAQDLPQDFVDAHNAARAQVGIGPVSWDETVANYAQQYANQHVNDCQMVHSNGPYGENLAWSSADLSGTNAVQMWVNEKQFYDYASNSCVGSECRHYTQVVWKNSVKIGCAKVECNNNGGTFITCNYDPSGNYIATCQMEHSMEPYGENLTEAFEMTTTELTVNYWGSEKKNYDHRSNKRPQIIDPSKLMLGTSLDVLQVLES* 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1042178 1044131 + Chy1G001510.1 Chy01g00151 217332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00151 229 PRINTS Allergen V5/Tpx-1 family signature 97 110 IPR001283 -
Chy01g00151 229 PRINTS Allergen V5/Tpx-1 family signature 120 136 IPR001283 -
Chy01g00151 229 PRINTS Allergen V5/Tpx-1 family signature 148 161 IPR001283 -
Chy01g00151 229 PRINTS Allergen V5/Tpx-1 family signature 51 69 IPR001283 -
Chy01g00151 229 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 161 207 IPR001283 -
Chy01g00151 229 ProSitePatterns CRISP family signature 2. 148 159 IPR018244 GO:0005576
Chy01g00151 229 Gene3D CAP 25 162 IPR035940 -
Chy01g00151 229 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 23 160 IPR001283 -
Chy01g00151 229 SUPERFAMILY PR-1-like 161 206 IPR035940 -
Chy01g00151 229 SMART SCP_3 30 161 IPR014044 -
Chy01g00151 229 ProSitePatterns CRISP family signature 1. 121 131 IPR018244 GO:0005576
Chy01g00151 229 CDD CAP_PR-1 32 160 - -
Chy01g00151 229 Pfam Cysteine-rich secretory protein family 36 153 IPR014044 -
Chy01g00151 229 PANTHER PATHOGENESIS-RELATED PROTEIN 1 161 207 - -
Chy01g00151 229 PANTHER PATHOGENESIS-RELATED PROTEIN 1 23 160 - -
Chy01g00151 229 SUPERFAMILY PR-1-like 16 160 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00151 K13449 PR1; pathogenesis-related protein 1 - csv:101211811 313.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00149 Chy-Chr1:1030655 Chy01g00151 Chy-Chr1:1042178 1.84E-66 dispersed
Chy01g00151 Chy-Chr1:1042178 Chy01g00156 Chy-Chr1:1062101 8.77E-12 dispersed
Chy01g00155 Chy-Chr1:1057372 Chy01g00151 Chy-Chr1:1042178 3.74E-20 dispersed
Chy02g01068 Chy-Chr2:7348693 Chy01g00151 Chy-Chr1:1042178 2.33E-45 dispersed
Chy01g00150 Chy-Chr1:1035597 Chy01g00151 Chy-Chr1:1042178 3.20E-81 tandem
Chy01g00151 Chy-Chr1:1042178 Chy01g00152 Chy-Chr1:1045498 2.05E-46 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g793 . . Bda06g01148 . . . . . . . . . . . . . . . . . . . . . Cla02g00706 Cam02g0740 Cec02g0754 Cco02g0780 Clacu02g0749 Cmu02g0743 Cre02g1057 . . . . Lsi03g00622 Csa07g00663 . Cme01g00140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00151 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00151 Chy_Chr01 FPKM 0.0 0.0 1.153054 1.228314 0.670312 1.291939 0.71637 0.281719 0.0 0.25816