Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00152 ATGTCAAAAATGACACTCTCCAATATTCCCTCATCTATTTGCTTGATCATGCTAACCTTAATCCCCATGATCGTTGCTCATAATACCCCGCAAAACTACGTCGACGCCCACAATGCAGTTCGAGCTGAGGTAGGGGCCGATCCAGTCTTTTGGGATGAAGAACTTGCAAAGTATGCGCAAAATTATCTCGATTCAAAGATTTCAACGTGTGAGATGGTGCACTCCAATGGCTCTTATGGTGAGAACCTAGCAACGCTAGATGGTTTGTTGACAGCAGCAGCTGCAGTACAGGCATGGGCGGATGAGAAGAAATACTATGACCATAATTCCAACAAATGCGTTGGGGGCGAGTGTCGCCATTACACCCAGTTGGTGTGGAAGAACAGTTTCTTAATAGGGTGTGCCAATATCAAGTGCAAAAACAATTGGTCTTTGGTCTCATGCAATTATAGTCCTGCTGTAGTCGTTCTTGTACTGAAACGTTGTGAAGCCCAAAACTCAGCTCAAGATTACATCAATGGGCACAACTCAGCAAGATCAACAGTGGGAGTTGGGAATATTGTATGGAACACAACACTTGCAGCCTATGCTCAAACATATGCAAACTCAAGGAAAGGTGACTGCCAATTGATCCATTCAAATGGGCCTTATGGAGAAAATATTGCAAAGGGAAACAATGGGTTTAGTGGAGCAGCTGCAGTGAAGCTATGGGTTGATGAAAAGCCTTATTATAGTTATAGCAAAAATGCATGCGAAGGTGGTGAGTGTCTTCATTACACTCAAGTTGTTTGGGAAACCTCTTACAGAGTTGGATGTGCAAGAGTTCAATGCAATAATGGTTGGTGGTTTGTTTCTTGCAATTATGATCCTCCTGGCAATTGGGATGGAGAGTGGCCTTATTAG 903 43.41 MSKMTLSNIPSSICLIMLTLIPMIVAHNTPQNYVDAHNAVRAEVGADPVFWDEELAKYAQNYLDSKISTCEMVHSNGSYGENLATLDGLLTAAAAVQAWADEKKYYDHNSNKCVGGECRHYTQLVWKNSFLIGCANIKCKNNWSLVSCNYSPAVVVLVLKRCEAQNSAQDYINGHNSARSTVGVGNIVWNTTLAAYAQTYANSRKGDCQLIHSNGPYGENIAKGNNGFSGAAAVKLWVDEKPYYSYSKNACEGGECLHYTQVVWETSYRVGCARVQCNNGWWFVSCNYDPPGNWDGEWPY* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1045498 1048769 - Chy1G001520.1 Chy01g00152 217333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00152 300 SUPERFAMILY PR-1-like 166 300 IPR035940 -
Chy01g00152 300 ProSitePatterns CRISP family signature 2. 283 294 IPR018244 GO:0005576
Chy01g00152 300 PANTHER CAP (CYSTEINE-RICH SECRETORY PROTEINS, ANTIGEN 5, AND PATHOGENESIS-RELATED 1 PROTEIN) SUPERFAMILY PROTEIN 15 153 - -
Chy01g00152 300 SUPERFAMILY PR-1-like 27 153 IPR035940 -
Chy01g00152 300 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 15 153 IPR001283 -
Chy01g00152 300 PRINTS Allergen V5/Tpx-1 family signature 187 205 IPR001283 -
Chy01g00152 300 PRINTS Allergen V5/Tpx-1 family signature 256 272 IPR001283 -
Chy01g00152 300 PRINTS Allergen V5/Tpx-1 family signature 283 296 IPR001283 -
Chy01g00152 300 PRINTS Allergen V5/Tpx-1 family signature 233 246 IPR001283 -
Chy01g00152 300 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 160 300 IPR001283 -
Chy01g00152 300 SMART SCP_3 166 296 IPR014044 -
Chy01g00152 300 SMART SCP_3 28 158 IPR014044 -
Chy01g00152 300 CDD CAP_PR-1 168 300 - -
Chy01g00152 300 Pfam Cysteine-rich secretory protein family 173 288 IPR014044 -
Chy01g00152 300 Pfam Cysteine-rich secretory protein family 34 150 IPR014044 -
Chy01g00152 300 ProSitePatterns CRISP family signature 1. 119 129 IPR018244 GO:0005576
Chy01g00152 300 Gene3D CAP 165 300 IPR035940 -
Chy01g00152 300 Gene3D CAP 28 157 IPR035940 -
Chy01g00152 300 PANTHER CAP (CYSTEINE-RICH SECRETORY PROTEINS, ANTIGEN 5, AND PATHOGENESIS-RELATED 1 PROTEIN) SUPERFAMILY PROTEIN 160 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00152 K13449 PR1; pathogenesis-related protein 1 - csv:101211573 315.849
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00152 Chy-Chr1:1045498 Chy01g00154 Chy-Chr1:1053223 2.28E-99 dispersed
Chy01g00151 Chy-Chr1:1042178 Chy01g00152 Chy-Chr1:1045498 2.05E-46 tandem
Chy01g00152 Chy-Chr1:1045498 Chy01g00153 Chy-Chr1:1050234 7.39E-42 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g795 . . Bda06g01147 . Bpe07g00299 . . Bma12g00311 Cmo19g00542 . . . . . . Cpe04g00337 Cpe15g00421 . . . . . . . Cla02g00708 Cam02g0744 Cec02g0756 Cco02g0783 Clacu02g0751 Cmu02g0745 Cre02g1060 Cone12ag1024 Cone8ag1057 . . Lsi03g00624 Csa07g00662 . Cme01g00141 . . . . . . . . . . . . Cma19g00533 . . . . . . . . . . . . . . . . . . . . Chy01g00152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005602 0 1 0 0 0 3 0 2 2 2 2 3 4 2 1 1 3 0 3 2 1 1 0 1 1 2 2 0 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00152 Chy_Chr01 FPKM 0.847275 0.653553 1.108748 1.043993 34.1138 32.343872 33.193302 0.206267 0.368785 0.205314