Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00153 ATGGCACTCGTCACCGTTCTCTTTGCCCTTTGCATCGTTGCACTAACCCTAACCCCAATCGTCGTTGCTCAAAACAGCCCTCAAGACTTCTTTGACGCGCACAATGCAGTTCGAGCCAAGGTCGGGGCTGAACCCCTCTTTTGGGACGAAGAACTTGAAGCTTACGCTAAAAATTATATCACGTCGAAGATTAAAACTTGTAAAATGGTGCACTCTGTTGGCCCTTACGGTGAGAACTTGGCAACAGCGAACAGTGTGTTAACCGCAGCAGCTGCAGTGAACGCATGGGCAGTCGAGAAGAAGTACTATAACCATAACTCGAACAAATGTGAGGGAGGCGAGTGCAGACATTATACACAGTTGGTGTGGAAGAATAGTTTTTTGGTGGGTTGTGCTACCGTTAAATGCAAGAACAATGGGTCTTTAGTCTCATGCAACTATAGTCCTTCTGGGAATGTTGTAGGCATAAAGGAAAATGTGGGGTAA 486 46.3 MALVTVLFALCIVALTLTPIVVAQNSPQDFFDAHNAVRAKVGAEPLFWDEELEAYAKNYITSKIKTCKMVHSVGPYGENLATANSVLTAAAAVNAWAVEKKYYNHNSNKCEGGECRHYTQLVWKNSFLVGCATVKCKNNGSLVSCNYSPSGNVVGIKENVG* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1050234 1051377 - Chy1G001530.1 Chy01g00153 217334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00153 161 PRINTS Allergen V5/Tpx-1 family signature 115 131 IPR001283 -
Chy01g00153 161 PRINTS Allergen V5/Tpx-1 family signature 92 105 IPR001283 -
Chy01g00153 161 PRINTS Allergen V5/Tpx-1 family signature 46 64 IPR001283 -
Chy01g00153 161 PRINTS Allergen V5/Tpx-1 family signature 142 155 IPR001283 -
Chy01g00153 161 SUPERFAMILY PR-1-like 24 156 IPR035940 -
Chy01g00153 161 ProSitePatterns CRISP family signature 1. 116 126 IPR018244 GO:0005576
Chy01g00153 161 ProSitePatterns CRISP family signature 2. 142 153 IPR018244 GO:0005576
Chy01g00153 161 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 17 155 IPR001283 -
Chy01g00153 161 SMART SCP_3 25 155 IPR014044 -
Chy01g00153 161 Pfam Cysteine-rich secretory protein family 31 147 IPR014044 -
Chy01g00153 161 PANTHER PATHOGENESIS-RELATED PROTEIN 1 17 155 - -
Chy01g00153 161 Gene3D CAP 21 161 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00153 K13449 PR1; pathogenesis-related protein 1 - csv:101211237 276.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00153 Chy-Chr1:1050234 Chy01g00156 Chy-Chr1:1062101 4.88E-58 dispersed
Chy01g00152 Chy-Chr1:1045498 Chy01g00153 Chy-Chr1:1050234 7.39E-42 tandem
Chy01g00153 Chy-Chr1:1050234 Chy01g00154 Chy-Chr1:1053223 6.87E-39 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g799 Blo02g00914 . Bda06g01146 . Bpe07g00300 . . Bma12g00312 Cmo19g00541 . . . . . . . Cpe15g00420 . . . . . . . Cla02g00709 Cam02g0746 Cec02g0757 Cco02g0784 Clacu02g0752 Cmu02g0746 Cre02g1061 . Cone8ag1053 . . Lsi03g00626 Csa07g00658 . Cme01g00144 . . . . . Bpe05g00458 . . . . . Cma11g01690 Cma19g00532 . . . Cpe01g00380 . . . . . . . . . . . . . . . . Chy01g00153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005602 0 1 0 0 0 3 0 2 2 2 2 3 4 2 1 1 3 0 3 2 1 1 0 1 1 2 2 0 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00153 Chy_Chr01 FPKM 17.769075 20.274446 19.665216 18.151625 17.362661 19.520115 17.887699 9.891131 11.30221 10.922253