Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00154 ATGGGATTTGCCAACATTCTCTCCACCCTTTGTTTATTGGGGCTAACCCTAACCCTAACCCTAGCTTCTACTGCTCCCAGCTTGGCCAAAAGCTCCACCAAAAACTACATTGACGCACACAATGCCGTCCGAGCAGCTGTTGGCGTCGAGCCTCTTCATTGGAACTCGACTTTGGCTGATTATGCTCAAAATTACGCTAACACGAAGATCGCTACTTGTCAAATGGAGCACTCGGGAGGACCTTACGGCGAAAACCTAGCAGAGGGATACGAAGTAATGACAGCTGAGACAGCAGTGAGTCTCTGGGCCGACGAGAAGAAACATTACGACTACAATTCGAATACTTGCAGCAATGACCCTAGCAATTGCCTCCATTATACACAGTTGGTATGGAGGAACACAAAATCTGTTGGTTGTGCACAAAAAATGGTTTCCTCCACTATTATTCCCTCTACCATTTGCATGGTAAGTTTCCTCCTAGCTACTACCATCTCCAATGCCCAAAACTCCCCCCAAGACTTCGTTGATACGCACAACGACATCCGAGCGGCAGTAGGTGTCGGCCCAGTCTCCTGGGACGACACTCTAGCCGCCTATGCTCAGAGTTATGCTGATAGTAAGATGGATACTTGTGAGATGGAGCACTCCAATGGACCTTATGGTGAAAACCTAGCTGAGGGGTATGACGAGATGACAGGGGTGGAGGCGGTGAAGTTCTGGGCAACTGAGAAAAAGTTCTACAACCACCATTTGAATCGATGCGTGGGGGACGAGTGTGGACACTATACACAAATAGTGTGGAGGCACACTACAAACATAGGGTGTGGTAGAGTGAAGTGTGAGAACAATTGGGTTTTTGTGATCTGCAACTATAATCCTCCTGGCAACTATATTGGCCAACATCCTTACTGA 912 47.81 MGFANILSTLCLLGLTLTLTLASTAPSLAKSSTKNYIDAHNAVRAAVGVEPLHWNSTLADYAQNYANTKIATCQMEHSGGPYGENLAEGYEVMTAETAVSLWADEKKHYDYNSNTCSNDPSNCLHYTQLVWRNTKSVGCAQKMVSSTIIPSTICMVSFLLATTISNAQNSPQDFVDTHNDIRAAVGVGPVSWDDTLAAYAQSYADSKMDTCEMEHSNGPYGENLAEGYDEMTGVEAVKFWATEKKFYNHHLNRCVGDECGHYTQIVWRHTTNIGCGRVKCENNWVFVICNYNPPGNYIGQHPY* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1053223 1056983 - Chy1G001540.1 Chy01g00154 217335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00154 303 ProSitePatterns CRISP family signature 1. 260 270 IPR018244 GO:0005576
Chy01g00154 303 ProSitePatterns CRISP family signature 2. 286 297 IPR018244 GO:0005576
Chy01g00154 303 CDD CAP_PR-1 171 303 - -
Chy01g00154 303 Pfam Cysteine-rich secretory protein family 38 141 IPR014044 -
Chy01g00154 303 Pfam Cysteine-rich secretory protein family 176 291 IPR014044 -
Chy01g00154 303 SUPERFAMILY PR-1-like 169 303 IPR035940 -
Chy01g00154 303 Gene3D CAP 31 161 IPR035940 -
Chy01g00154 303 Gene3D CAP 168 303 IPR035940 -
Chy01g00154 303 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 162 303 IPR001283 -
Chy01g00154 303 SMART SCP_3 169 299 IPR014044 -
Chy01g00154 303 SMART SCP_3 31 150 IPR014044 -
Chy01g00154 303 SUPERFAMILY PR-1-like 32 147 IPR035940 -
Chy01g00154 303 PRINTS Allergen V5/Tpx-1 family signature 286 299 IPR001283 -
Chy01g00154 303 PRINTS Allergen V5/Tpx-1 family signature 190 208 IPR001283 -
Chy01g00154 303 PRINTS Allergen V5/Tpx-1 family signature 236 249 IPR001283 -
Chy01g00154 303 PRINTS Allergen V5/Tpx-1 family signature 259 275 IPR001283 -
Chy01g00154 303 PANTHER PATHOGENESIS-RELATED PROTEIN 1 162 303 - -
Chy01g00154 303 PANTHER PATHOGENESIS-RELATED PROTEIN 1 24 144 - -
Chy01g00154 303 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 24 144 IPR001283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00154 K13449 PR1; pathogenesis-related protein 1 - csv:101211323 345.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00152 Chy-Chr1:1045498 Chy01g00154 Chy-Chr1:1053223 2.28E-99 dispersed
Chy01g00154 Chy-Chr1:1053223 Chy01g00156 Chy-Chr1:1062101 1.52E-46 dispersed
Chy01g00153 Chy-Chr1:1050234 Chy01g00154 Chy-Chr1:1053223 6.87E-39 tandem
Chy01g00154 Chy-Chr1:1053223 Chy01g00155 Chy-Chr1:1057372 5.97E-47 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g802 . . Bda06g01145 . . . . . Cmo19g00540 . . . . . . Cpe04g00339 Cpe15g00419 . . . . . . . Cla02g00713 Cam02g0763 Cec02g0761 Cco02g0787 Clacu02g0754 Cmu02g0748 Cre02g1065 . . . . Lsi03g00627 Csa07g00657 . Cme01g00145 . . . . . . . . Sed07g1155 . . Cma11g01688 . . . . . Bhi11g01091 Tan01g0594 Cmetu07g1308 . . . . . . . . . . . Lsi03g00997 . Chy01g00154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002412 6 2 3 5 3 2 0 2 2 2 2 2 2 2 2 2 2 1 1 2 2 4 0 2 1 0 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00154 Chy_Chr01 FPKM 1.576955 1.421867 5.117658 5.107173 5.671528 4.516846 5.366242 0.127112 0.0 0.0