Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00164 ATGCCTTTATCTTGTAGTTCAGAGGATTTGTTTGAAGAAGAAGAAGCTTTTTGGATGGAGAAATCTTCTCTGGTGGTTTTTTCTGAGATGGGAATGGAGGATAATGGCTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGATCTTGGTTTGCACCCATTAGCAGCTGCTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAATCAAATATTGATCAGAAGGCTTCTTTAAACCATTCTCACAATGCCATACTTGGGTATATGAAACAGCTCAAGAGTGATGGGTGGAGTTCATACCAAACAACTAATCATTTACCGAACTCACAAGTCGTTGCTTACCCAACTGTATCTGTTTCGGCTTCTAACTACATGAACCAAATGGACTTCACTAGGCCAAAAGAGGAGGTTGTGTGTCCTCAGAGTATTAGCAACCTCCCTTCTGATATGTTGATTTCTCAGGGCTCATTAGCCCATCAAAGCCACAGAACCAAGTCGAATCGTGGAACAAGAAGTCCCTCTAGAATCCCCCAGGCTCAAGATCACATTCTTGCAGAGCGGAGACGACGAGAGAAGCTCAGCCAGCGATTTATTGCTTTGTCTGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCCATTAAGTACCTGAAACAACTTCAAGAGAAAGTGAAGATACTAGAGGAACAAACCCGCAGGAAAGACATTGAATCCGTGGTATTTGTCAAGAAATCCCATGTTTTCCCTGATGGAAATGACACATCAAAAGAAGAGGATGAGCCACTTCCCGAAATTGAAGCAAGATTTTGCGACAAAAATGTCCTTATAAGAATACACTGTGAAAAAAAGAAAGATATCATAGAGAAAACAATAGCTGAAATTGAAAATTTGCACCTTACTATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTCGCTCTCGACATAACTATTATCGCACAGATGGATAATGAATTCTGTTTAACATTAAAGGACCTAGTGAAGAATTTGCAGTCGACTTTGGGCTCGTTTTAA 1050 40.95 MPLSCSSEDLFEEEEAFWMEKSSLVVFSEMGMEDNGFVNQWHKSSMDDLGLHPLAAAFGENLQHSYAQSNIDQKASLNHSHNAILGYMKQLKSDGWSSYQTTNHLPNSQVVAYPTVSVSASNYMNQMDFTRPKEEVVCPQSISNLPSDMLISQGSLAHQSHRTKSNRGTRSPSRIPQAQDHILAERRRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFVKKSHVFPDGNDTSKEEDEPLPEIEARFCDKNVLIRIHCEKKKDIIEKTIAEIENLHLTIVNSSVMSFGSLALDITIIAQMDNEFCLTLKDLVKNLQSTLGSF* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1134875 1136528 - Chy1G001640.1 Chy01g00164 217345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00164 349 MobiDBLite consensus disorder prediction 155 180 - -
Chy01g00164 349 PANTHER BHLH TRANSCRIPTION FACTOR 22 348 - -
Chy01g00164 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 239 IPR036638 GO:0046983
Chy01g00164 349 CDD bHLH_AtNAI1_like 178 250 - -
Chy01g00164 349 SMART finulus 182 231 IPR011598 GO:0046983
Chy01g00164 349 Coils Coil 215 242 - -
Chy01g00164 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Chy01g00164 349 Gene3D - 176 248 IPR036638 GO:0046983
Chy01g00164 349 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 22 348 - -
Chy01g00164 349 Pfam Helix-loop-helix DNA-binding domain 179 226 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00164 - - - csv:101209844 614.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00164 Chy-Chr1:1134875 Chy02g00794 Chy-Chr2:4964598 2.45E-54 dispersed
Chy01g00164 Chy-Chr1:1134875 Chy06g02143 Chy-Chr6:25749137 1.15E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g826 . . . . . . . . Cmo19g00526 Cmo11g01441 . . . . Sed10g1926 Cpe04g00344 Cpe15g00409 Bhi05g00987 Tan02g1087 Cmetu01g1268 Lac12g0126 Hepe02g0676 . . Cla02g00729 Cam02g0775 Cec02g0773 Cco02g0802 Clacu02g0770 Cmu02g0763 Cre02g1077 . Cone8ag1047 . . Lsi03g00644 Csa07g00647 . Cme01g00155 . . . . . . . . . . . . Cma19g00513 Car11g01157 Car19g00388 . . . . . . . . . . . . . . . . . . Chy01g00164 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000301 3 5 4 3 4 4 5 4 4 4 4 4 5 4 4 7 4 9 5 4 4 5 3 5 5 4 4 11 7 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17244 PF00010 HLH 2.60E-10 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00164 Chy_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0