Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00181 ATGTTGGAGCCGGTTAGTTGTTGCCAGAGCTCCCAGTCCCAGATTTATGGTGCAGTTAAACAAAAGAATCCTTTCAGGGCCTACTCTCATACTGTTCATCAACTTTGTGGACCTTCCTTCACCTTACATTATTCACACTCGAAGAAAGTGGCTGTTCCATCATGCACTTTTAATTACTGGAGGAATGATTATTCTTTAGTCCCTGTACTTTGTCACAATGGTGCTACTACATTAACGTTCAAAGTAGTTGGACAGAATGGGTACAATTGGTCTAATCGTAGGCCTAAACAGAGAGAAAGACTTAGAACACGTGCAGCTCTTGATGTTGCAGCTGCTGTTGACGTCATCAATGATTTAGGATTGGATACATTGACATTCCTAGCTGTGACTGTCGTAGTTGTCCCTTTATTTAGGAGAATTAAGGCTAGCCCTATTCTTGGTTTCTTCTTTGCTGGGATTGTACTTAATCAATTTGGCGTGATTAGAAATATTGTAGACGTTAAAGTTTTATCTGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGTTTGGAGCTTTCATTTGCACGTTTAAAGGCTCTTGCAAGGTTTGCTTTTGGCATGGGATTGACACAGGTCATATTGTCTACTATCGCTTTCACAGCATTTGAACTTCCCACAAATGGGGCTGTTGGAACAAAAATTTTGGAGTTCCTTTTTCACGCCAGATCTGACTTGGTTAACATTAGAAGCGTTGATGAAGCTATTGTTATTGGAGCTGCCCTTTCTCTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAAAAAGGAGAGCTTGCGACAAGATTTGGCTCAGCGACTTTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCCTGGTCATACTTCCAGTTCTTGAGAGCCAGAATTTGGGCACGGAAAGTATCTGGCCAATGCTCGCACAAGAAAGTTTGAAGGCTTTAGGTGGACTGGGTCTACTGTCCCTTGGTGGAAAGTTGATTCTTAGGCGAGTTTTTGAGGTTGTTGCGGAAGCAAGAAGCTCGGAGGCTTTCGTCGCGCTTTGCCTGCTAACAGTTGCTGGCACTTCACTAATCACTCAGAAATTGGGCTTTAGTGATACGCTGGGAGCATTTTTGGCTGGGGCAATATTAGCAGAAACTAATTTCCGAACACAGATTGAAGCAGATATTCGGCCATTTAGGGGCTTGCTCCTTGGGTTATTCTTTGTTACCACAGGAACCTCCATTGATATGCAGCTCTTGTTCCGAGAATGGCCAAATGTTCTTGCACTTTTGGCAGGTTTAATAGCAATCAAGACCCTTATAATAACAGCAATAGGTCCCCGCGTGGGCCTCACTACTCAAGAAAGTGTAAGAATAGGCTTCCTTCTATCTCAAGGAGGCGAGTTCGGATTTGTAGTGTTTTCACTAGCCAACAGGCTTGGAGTGTTACCACTCGAGTTAAACAAACTGCTCATCATTATTGTTGTCTTGTCAATGGCTCTAACTCCCTTGCTTAATGAAGCTGGACGAAAGGCATCGGAATTCATCAGCGAGAAGTACAAGACAGAGGATAAAGCTGCAGATACGGTGAACTTTGACGCTACTGAACCTGTTGTCATTGTTGGATTTGGACAAATGGGTCAGGTTCTGGCAAATTTCTTATCTACACCTTTGGCATCTGGGTTAGATGGCAATACTCCTGGATGGCCATATGTAGCGTTTGACATTGATCTTTCTGTAGTGAAGACATCTAGAAAGCTTGGTTTTCCTGTTCTCTATGGAGATGGATCACGACCAGCAGTTTTGCAATCTGCAGGAATTTCTTCACCAAAAGCTGTCATGGTTATGTTCACGGAGAAGAAGGCAACAATCGATGCTGTTCAAAAGCTCCGGCTTGCGTTCCCAGCTATCCCAATTTATGCCCGAGCTAAGGATGTGGTGCATCTATTAGATTTAAAGACCGCAGGCGCAACGGATGCTCTTTTGGAAGATGCTGAGACTAGTTTACAACTTGGATCAAAGCTTTTGAAAGGGCTTGGAGTCATGTCAGACCAAGTGTCTTTCCTCAGTCAAATGGTTCGAAACTCTATGGAAATACAAGCTCAAGATGCAATAGACAAATCCAATGAGCAAGAGTTAGAGATTATGAAACCGCTTCAGCAGTACACTGCATTGATAGTCTTATACTTTGTTATAGACTTACTTGAGTTACTTCCATATCTAACTTTGTCTGTACTCACTCAAAAAATTGACGACATTACTGATTTGGTTGATCAGATACGTGTCAAGGACTCCATCGAGTCCCCCGAGAACGAACTGTCGAGACTGAACCGGGAAGATAAAACTCAAATCTTAAATGGAAAAGAGGTAGATCAAATGAAACAAGGTACTGTTTTCGAGAAGGCTGAAGATTTAGATGGAAATGGAGTGTTATACTGTGACCTTGATACAGAGAACAACTTTTTAGAGGAAAATGTGGTAGAGCCACCAACAACCCACATAGCAGCCACTGATGGTGTAGAGAAGTGA 2541 42.58 MLEPVSCCQSSQSQIYGAVKQKNPFRAYSHTVHQLCGPSFTLHYSHSKKVAVPSCTFNYWRNDYSLVPVLCHNGATTLTFKVVGQNGYNWSNRRPKQRERLRTRAALDVAAAVDVINDLGLDTLTFLAVTVVVVPLFRRIKASPILGFFFAGIVLNQFGVIRNIVDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPTNGAVGTKILEFLFHARSDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLFREWPNVLALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMGQVLANFLSTPLASGLDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKTAGATDALLEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDAIDKSNEQELEIMKPLQQYTALIVLYFVIDLLELLPYLTLSVLTQKIDDITDLVDQIRVKDSIESPENELSRLNREDKTQILNGKEVDQMKQGTVFEKAEDLDGNGVLYCDLDTENNFLEENVVEPPTTHIAATDGVEK* 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1221375 1231414 + Chy1G001810.1 Chy01g00181 217362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00181 846 Gene3D - 118 518 IPR038770 -
Chy01g00181 846 Gene3D - 541 711 - -
Chy01g00181 846 Pfam Sodium/hydrogen exchanger family 126 510 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Chy01g00181 846 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 82 792 - -
Chy01g00181 846 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 541 679 IPR036291 -
Chy01g00181 846 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 82 792 - -
Chy01g00181 846 ProSiteProfiles RCK N-terminal domain profile. 541 673 IPR003148 GO:0006813
Chy01g00181 846 Pfam TrkA-N domain 542 664 IPR003148 GO:0006813
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00181 Chy-Chr1:1221375 Chy06g00880 Chy-Chr6:6348128 7.13E-30 dispersed
Chy06g00189 Chy-Chr6:1238433 Chy01g00181 Chy-Chr1:1221375 9.64E-100 transposed
Chy01g00181 Chy-Chr1:1221375 Chy03g01644 Chy-Chr3:18293432 1.19E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00181 - - csv:101209266 1424.45