Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00189 ATGGAGGTCTCAATTCTCACCTCTCCAAGCTGCCTTCTCCTCATCTTATGCTACTCTAACTTCTTTTGGAGTCTAACCAACCCAGGTTCAGTCTCAGCCATCATTTCTTATGAGAACTTAACATTCAACCTCACCAATTTCGGCCCAAATGGCCACGACATTCATTATGAAGGAGATACATACCCTTCCAACAATGTCATTCAGCTTACCATGAACCAGAGAGACATGCCTCTCAATGGAAGTGTTGGTCGTGCAACCTACAAAGATCCTTTCCATCTTTGGGAGAGTGGCCACAGGAATCTTGCAGATTTCACCACCCAGTTCACCTTCACAATTGACTCACAGCACAGTCACACTTATGGCGACGGCTTTGCCTTCTTCATTGCCCCTGTGGAATCAAGGCTTCCACCTCACTCAGGAGGTGGCAACTTTGGTCTCTTGAGTTCCAACAAGAGTGATCCAGATGTGGTTCCAACAGCTAACTTTGTTGCTGTCGAGTTTGATACCTACACAAATGCATGGGATCAGTCGGAGAATCACATCGGCGTTGATGTTGACAATGTTAAATCTCTAAGCTCTACTTCATGGTGGTGGAGTGACATAGAAAATGGTGGGAAAGTTAAAGCAGCAATAAGTTACAACTCAAGCTACCATAATTTGACTGTTTTCTTGGTTGATGAAAAAGATTATGAAGTTTCTCCAAAAAACTCTTCTACCTTCACTTTCAACATTGATTTGAGAGAGCATTTACCAGAATGGGTAACAATTGGCTTTTCAGGATCAACCGGATCTTTCTTCGAGATCCATACAATTAGCTCATGGAGTTTCAGCTCTAGATTACAAGTTGAAGTCAATGTTACCAACACAACTGAACCAGCTAGCTCTCCTGTTAACTCCAAGAAAGGAATCAACATGAAATGGTTCGGAATAATCTTCACCATGGCACTTTCACTCTTTCTAATTTCGGGGTTGGTTTGGTTTGGGGTATGGATGAAGAGAACTAGCAGAAGAAAAAGCGTGAGAAGGAACCAAGAGGAAGATTTTGAAAACGAAACAGGGCCAAGGAAGATTTCATATAAAGACCTATTAGCAGCAACCAACAAGTTCAGTGATGAAAATGTGTTGGGACAAGGAGGCTTTGGCAAAGTATACAGAGGGTTCCTAGACAACAAGGAACTTGATGTGGCAGTGAAGAGAATCACCCCAAACAACCTCCATCAAGGGTCAAGAGAATTTGCATCAGAAGTGAAAACAATTAGCAAATTAAGACACAAGAACTTAGTAGAGCTAATTGGGTGGTGCTGCTGCAGTAAAGACCAAGAATATCTCATAGTCTACAAATTCATGCCTAACAAAAGCTTAGACTTCCACCTCTTTCAACAAAATAACCTCCTAACATGGGATCACAGATACAAAATCGCAATAGGTTTAGCCTTAGCACTACATTATCTACAAGAGGAACAAGATCCATATATTCTACACAGAGACATAAAATCAAGCAACATCCTATTAGACGCCGAATTCAACGCGAAACTCGGCGACTTCGGACTCGCTAAGCTCGTTGATCATGGAAAACAATCAATAACCACCATACTACGAGGAACAGAAGGTTATGTAGCACCAGAGTACCTGGAAAGCAGCGTGGCAAGTAAAGAATCCGACATCTATAGCTTCGGCATAGTATGCTTGGAAATCGCCTGCGGAAAACAAGCCCTAGGTGAAGCGAGAGAAGACGGAAAGAGACGTTTGATAAAACTGGTTGAATGGGTTTGGGATTACTACCGAAGAAGGAGTGTGGAGGAGGCTGCGGACCCGAAATTGCGGCAAAATTTCAAGAGAGAAGAGATTAAACAACTGTTGATCGTGGGACTTGCTTGTGCTCAGCCGGATTTCCGTGTGAGGCCTTCCATCAAACAGGTGATCGACATGCTGAACTTCAAATCACCATTGCCGAATCTGCCATTGGAATATCCAGGATTGTCGAGATCGGCAGTGTTTTTGAGTGCAGAAATGGAATCGTTACGAACATCGTCGTGTTTACAAAGCGGAAATCTTAATGGAAAAAGTATTTCTTCCAAGAATTCCACTGCTTCTTCCACTTTTTCGAATATGGGCTAA 2118 42.68 MEVSILTSPSCLLLILCYSNFFWSLTNPGSVSAIISYENLTFNLTNFGPNGHDIHYEGDTYPSNNVIQLTMNQRDMPLNGSVGRATYKDPFHLWESGHRNLADFTTQFTFTIDSQHSHTYGDGFAFFIAPVESRLPPHSGGGNFGLLSSNKSDPDVVPTANFVAVEFDTYTNAWDQSENHIGVDVDNVKSLSSTSWWWSDIENGGKVKAAISYNSSYHNLTVFLVDEKDYEVSPKNSSTFTFNIDLREHLPEWVTIGFSGSTGSFFEIHTISSWSFSSRLQVEVNVTNTTEPASSPVNSKKGINMKWFGIIFTMALSLFLISGLVWFGVWMKRTSRRKSVRRNQEEDFENETGPRKISYKDLLAATNKFSDENVLGQGGFGKVYRGFLDNKELDVAVKRITPNNLHQGSREFASEVKTISKLRHKNLVELIGWCCCSKDQEYLIVYKFMPNKSLDFHLFQQNNLLTWDHRYKIAIGLALALHYLQEEQDPYILHRDIKSSNILLDAEFNAKLGDFGLAKLVDHGKQSITTILRGTEGYVAPEYLESSVASKESDIYSFGIVCLEIACGKQALGEAREDGKRRLIKLVEWVWDYYRRRSVEEAADPKLRQNFKREEIKQLLIVGLACAQPDFRVRPSIKQVIDMLNFKSPLPNLPLEYPGLSRSAVFLSAEMESLRTSSCLQSGNLNGKSISSKNSTASSTFSNMG* 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1286559 1288676 - Chy1G001890.1 Chy01g00189 217370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00189 705 Gene3D - 37 291 - -
Chy01g00189 705 ProSitePatterns Legume lectins beta-chain signature. 163 169 IPR019825 -
Chy01g00189 705 SMART serkin_6 369 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00189 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Chy01g00189 705 ProSitePatterns Protein kinases ATP-binding region signature. 375 398 IPR017441 GO:0005524
Chy01g00189 705 Pfam Protein kinase domain 370 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00189 705 ProSitePatterns Legume lectins alpha-chain signature. 250 259 IPR000985 -
Chy01g00189 705 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 53 660 - -
Chy01g00189 705 CDD lectin_legume_LecRK_Arcelin_ConA 40 280 IPR001220 GO:0030246
Chy01g00189 705 SUPERFAMILY Concanavalin A-like lectins/glucanases 40 281 IPR013320 -
Chy01g00189 705 Gene3D Phosphorylase Kinase; domain 1 329 448 - -
Chy01g00189 705 Pfam Legume lectin domain 40 286 IPR001220 GO:0030246
Chy01g00189 705 ProSiteProfiles Protein kinase domain profile. 369 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00189 705 PANTHER - 53 660 - -
Chy01g00189 705 CDD STKc_IRAK 375 645 - -
Chy01g00189 705 Gene3D Transferase(Phosphotransferase) domain 1 449 657 - -
Chy01g00189 705 SUPERFAMILY Protein kinase-like (PK-like) 348 648 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00189 - - - csv:101209022 1382.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00189 Chy-Chr1:1286559 Chy11g00474 Chy-Chr11:5054605 1.89E-162 dispersed
Chy06g01588 Chy-Chr6:18066262 Chy01g00189 Chy-Chr1:1286559 5.33E-12 dispersed
Chy11g00471 Chy-Chr11:5039171 Chy01g00189 Chy-Chr1:1286559 1.19E-98 dispersed
Chy01g00189 Chy-Chr1:1286559 Chy01g00190 Chy-Chr1:1291140 7.28E-08 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g905 . Blo03g00035 Bda06g01133 . . . . . Cmo19g00508 Cmo11g01451 . . . . . Cpe04g00360 Cpe15g00386 Bhi05g00956 . . . . . . . . . . . . . . . . . Lsi03g00681 Csa07g00619 . Cme01g00179 . . . . . . . . . . . Cma11g01676 Cma19g00490 Car11g01167 Car19g00367 . . . . . . . . . Cla09g01596 . . . . . . . . Chy01g00189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013790 0 1 0 0 0 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 2 1 0 0 1 1 0 1 0 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70961 PF00069 Pkinase 6.60E-45 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00189 Chy_Chr01 FPKM 1.406863 0.0 1.539774 2.839386 0.0 0.0 0.994731 0.0 0.789915 0.0