Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00191 ATGGCTGCACAAAATAATCTTCTCATTCATTTGTTCTTTCTTGTTCCATTTGCAACTTCTTTATCTTTCAATTTCACCTCTTTCAATCAAGGTAACGCAGACATGATCTACGACAGAACATTCCCAACAAACCAAGCAATTGAGCTCACTGGAGACTCATCAAACAACAATATGAATTTTGTTGGACGAGCTACGTATTCGCAACCATTGCATCTTTGGGACGAAGCCTCTGGAAACATGTCAAGTTTCCAAACTCATTTCTCCTTTGCCATCAATTCAAGAGGAAGAGCTAACTATGGTGATGGCCTTACCTTCTTCTTTGCTCCCAATGGTTCTATCCTCCAGGCCAACATCTCAAGAGGCAGTGGCTTAGGTATTGGCTATGATCCCGAGTTATGGAATGGGACTGCCACGTTTTTTGCAGTTGAGTTTGATATCTACAGCAACAATTTTGATCCAGCTTTCGAACACGTAGGTATCGATATTAATTCGATGAAATCTATTGCGTATTTGAGATGGAAATGTGATATCATGGGAGGGAAGAGGAATGATGTTTGGATTAACTATGATTCTGTTACTCATAATTTGAGTGTTGTTTTTACTGGGTTTGAGAATAATAATACTCTGTTCCAACACCTTCACCATGTTGTAGATTTGAGGTTGAATCTACCTGAATGGGTTACTTTTGGTTTTTCTGCTTCTACTGGATATGAATATGCAACTCACTCTGTATATTCTTGGTCTTTTCACTCAACCCTTGAGTTGACCCTTGAACCAACCTTCACTACTGATCCCAACTCGGTTGCAAGTGCCCCAAGTCCTGGCCCAAGCTTGCCCCCAAACAATAATGATGGTAGCACTAGCAAGACAGGTCTAGAAATTGGATTGGGCATTGCTGGAGGAGTTGTCTTTGTGGGTGGGTTAGTGATCATTTGGATTATTGTTTGGAAGAAGATGGCAGCGATGAAGAACATAGAGGAGGAGATTATGTTGGATGACTCCGAGTTCGAGAAAGGTAAAGGACCTCGACGGTTTTCGTATAAGGAATTGGCTCGAGCAACAAACAATTTTAAGGAGGATAAGAAGCTTGGTGAAGGAGGATTTGGTGGGGTTTATAAAGGTTTTTTAAGGGAACTGAATTGCAATGTTGCTGTGAAGAGAATATCAAAAGGGTCTAAACAAGGGATAAAGGAGTATGCATCTGAGGTGAAAATCATAAGCCAATTAAGGCATAGAAACTTGGTTCAACTAATTGGTTGGTGTCATGAGAAAGACAAACTTCTATTGGTTTATGAATTCATGCCAAATGGAAGCTTAGATACCCAACTTTTCAAACCAAACAATTTCCTGACATGGGAGTTAAGAGAGGAAATTAGATCATTTGGAGATGAGGAGAAGATGGTGGAGTGTTTGATGGTGGTGGGTCTATGGTGTGCTCATCCAGATAGCAATTCTAGGCCTTCAATAAGGCAAGCCATTAATGTGTTGAACTTTGAAGCACCATTGCCAATTCTTCCTTCTCACTTGCCAGCACCCACTTATGATTTTAGACCAATTGCTTCTTCATCTACTTCATCTTCAACAACTCAAAGTGGTGTTGCTTCTCTTGCTACTAATAGTTCCAACTTATAG 1632 40.38 MAAQNNLLIHLFFLVPFATSLSFNFTSFNQGNADMIYDRTFPTNQAIELTGDSSNNNMNFVGRATYSQPLHLWDEASGNMSSFQTHFSFAINSRGRANYGDGLTFFFAPNGSILQANISRGSGLGIGYDPELWNGTATFFAVEFDIYSNNFDPAFEHVGIDINSMKSIAYLRWKCDIMGGKRNDVWINYDSVTHNLSVVFTGFENNNTLFQHLHHVVDLRLNLPEWVTFGFSASTGYEYATHSVYSWSFHSTLELTLEPTFTTDPNSVASAPSPGPSLPPNNNDGSTSKTGLEIGLGIAGGVVFVGGLVIIWIIVWKKMAAMKNIEEEIMLDDSEFEKGKGPRRFSYKELARATNNFKEDKKLGEGGFGGVYKGFLRELNCNVAVKRISKGSKQGIKEYASEVKIISQLRHRNLVQLIGWCHEKDKLLLVYEFMPNGSLDTQLFKPNNFLTWELREEIRSFGDEEKMVECLMVVGLWCAHPDSNSRPSIRQAINVLNFEAPLPILPSHLPAPTYDFRPIASSSTSSSTTQSGVASLATNSSNL* 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1293004 1295040 + Chy1G001910.1 Chy01g00191 217372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00191 543 PANTHER - 10 458 - -
Chy01g00191 543 PANTHER - 460 532 - -
Chy01g00191 543 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 255 IPR013320 -
Chy01g00191 543 MobiDBLite consensus disorder prediction 520 543 - -
Chy01g00191 543 MobiDBLite consensus disorder prediction 264 286 - -
Chy01g00191 543 Gene3D Phosphorylase Kinase; domain 1 342 433 - -
Chy01g00191 543 CDD lectin_legume_LecRK_Arcelin_ConA 21 253 IPR001220 GO:0030246
Chy01g00191 543 Gene3D - 18 265 - -
Chy01g00191 543 Pfam Legume lectin domain 20 254 IPR001220 GO:0030246
Chy01g00191 543 ProSitePatterns Protein kinases ATP-binding region signature. 363 386 IPR017441 GO:0005524
Chy01g00191 543 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 10 458 - -
Chy01g00191 543 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 460 532 - -
Chy01g00191 543 SUPERFAMILY Protein kinase-like (PK-like) 342 455 IPR011009 -
Chy01g00191 543 Pfam Protein kinase domain 357 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00191 543 ProSiteProfiles Protein kinase domain profile. 357 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00191 543 ProSitePatterns Legume lectins alpha-chain signature. 223 232 IPR000985 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00191 - - - csv:101208779 839.336
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00191 Chy-Chr1:1293004 Chy11g00474 Chy-Chr11:5054605 1.75E-16 dispersed
Chy01g00191 Chy-Chr1:1293004 Chy01g00196 Chy-Chr1:1320156 1.96E-15 proximal
Chy01g00190 Chy-Chr1:1291140 Chy01g00191 Chy-Chr1:1293004 3.41E-14 tandem
Chy01g00191 Chy-Chr1:1293004 Chy01g00192 Chy-Chr1:1296575 2.41E-18 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g907 . . . . . . . . Cmo19g00505 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00683 Csa07g00618 . Cme01g00183 . . . . . . . . . . . . Cma19g00488 . Car19g00365 . . . . . . . . . . . . . . . . . . Chy01g00191 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70962 PF00139 Lectin_legB 1.10E-62 CL0004 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00191 Chy_Chr01 FPKM 20.380579 26.307985 16.711113 18.096357 44.318321 39.226391 41.295139 15.924191 16.307816 15.642906