Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00192 ATGGCTGCCATAATCTCCATTTCCAGTTATCTTGTTCCTCTGTTCTTCTTCATCTACATTGTATCAATCTTCTCCACACTTACACTTGCAAATTCTTTATCTTTCAATTTCTCATCTTTCGATTCAAGTAATACCCACATATTCTACGAGAGAGCATTTCCATCAAATAGAACAATCAAGCTCACTGGAGAAAGGGTTAATAAAAACCAAAATTTCACAGGAAGAGCAACCTACTTTAAGCCTTTTCATCTTTGGGACAAACCCTCTGGGAATCTATCAAGTTTTCAAACTCATTTCTCCTTTGCCATTGATTCAGAAGGAGCAGAAAGGTATGGAGATGGGCTTACCTTCTTTTTTGCTCCTAATAATTCTAGGCTTGATGCTGAGATCTCAAAGGGTAGTGGATTAGGGATTGGGTATAATCCCAGTTTGACAAATTTAACATACAGTTCATTTTTTGCAATTGAGTTTGATATCTTTAGTAATTTCTTTGATCCACCTGAAAAAGTAGAACATGTAGGTATTGATATCAATTCAATGTCTTCTGTTGCTTACTCAATATGGAAATGTGATATTAAGAGCGGGAGGAGGACGGATGTTTGGATTAATTATGATTCTGCTACTTTGAATTTGAGTATTACTTTTACTGGGTATGAGAATAATAAAACTATATTGCAGAGACTTAAGCATGATGTAGACTTTAGGTTGACTCTACCTGAATGGGTTACTTTTGGGTTTTCTGCTGCAACTGGAGCTTTATATGCAACTCACAACATATATTCTTGGGATTTTAAGTCAACTCTAAATTTGAATTCTGATTCTAATTTGGCCCCAAGTCCTGGTCAGGGTAGCAAGGTAGGCCTAGTAGTTGGAGTGGGTGTTGGTGTTGGTGTATTGTTCTTAGTGTGTGGTTTGGTTATAGTTTGGATCTTTTTTTTGAAGAAAAGAAAGAAGAGGATGAAAATGAATTTGGAAGAGGATATTGTGTTGGATGATAGTGAGTTTGAAAAGGGTAAAGGACCTCGGAAGTTTTCGTATAGCGAATTGGCTCGAGCAACGAATAACTTTTGGGAGGATGAAAAGCTTGGCGAAGGAGGATTTGGTGGCGTTTATAGAGGTTTCTTGAGGGACTTAAATAGCTATGTTGCTGTGAAGAAAGTATCAAAAGGGTCTAGGCAGGGAATAAAAGAGTACGCATCTGAGGTGAAAATCATCAGCCAGTTGAGACATAGAAACTTGGTGCAACTCCTCGGGTGGTGTCATGAAAGAGGTGAGCTCTTGCTGGTTTATGAATTCATGTCAAATGGAAGTTTAGATGCCCATCTTTTTAAAGAAAACAACTTCTTAATATGGGAACATAGATACAAAGTTGCTCAAGGCATTGCCTCGGCTTTGTTATATCTGCATGAAGAGTGGGAAAAATGCGTGATACATCGAGATATAAAGTCAAGTAATGTGATGTTGGATTCAGATTTCAATGCAAAGCTTGGAGATTTTGGGTTGGCTAGGCTAGTGGATCATGCAATAGGCTCACAAACAACAGTTCTTGCTGGCACAATGGGCTACATGGCTCCTGAATGTGCTATAACAGGAAGAGCCAGTAAGGAATCAGATGTCTTCAGCTTTGGGATTGTAGCATTGGAAATTGCTTGTGGAAGAAGACCCTACAACCCCAATGTAGAGGAGGGAAAAATGGTGATGGTAGAGTGGGTTTGGGAGCTTTATGGGCATGGAAGGCTTCATGAAGCAGCCGACTCAAAACTCTATGGAAGCTTTGAGAATGAACCTCAACAACGACAACAGATTGAGTGTTTGATGGTTGTTGGACTGTGGTGTGCCCATCCAGATATAAACTGTAGACCATCAATAAGACAAGCAATTCATGTGATGAACTTTGAAGCCCCATTACCTGTTCTTCCTTTACAGTTCCCTACACTTGCTTATCATCATCCTCTTTCAGTGAACAGACCAATTATTTCTTCTTCATTTTCATCAACTCAAGATAGTGTTGTTTCTCAAAGTATTGGAAATGGCTTCAACTCTACTAATGTCTTAACTAGTGCTTCACAGGAGACTACAACTTCTTCAACTTCTTTTTCTGCATCAACTTCACTTTTGAATACACGGTAA 2130 38.83 MAAIISISSYLVPLFFFIYIVSIFSTLTLANSLSFNFSSFDSSNTHIFYERAFPSNRTIKLTGERVNKNQNFTGRATYFKPFHLWDKPSGNLSSFQTHFSFAIDSEGAERYGDGLTFFFAPNNSRLDAEISKGSGLGIGYNPSLTNLTYSSFFAIEFDIFSNFFDPPEKVEHVGIDINSMSSVAYSIWKCDIKSGRRTDVWINYDSATLNLSITFTGYENNKTILQRLKHDVDFRLTLPEWVTFGFSAATGALYATHNIYSWDFKSTLNLNSDSNLAPSPGQGSKVGLVVGVGVGVGVLFLVCGLVIVWIFFLKKRKKRMKMNLEEDIVLDDSEFEKGKGPRKFSYSELARATNNFWEDEKLGEGGFGGVYRGFLRDLNSYVAVKKVSKGSRQGIKEYASEVKIISQLRHRNLVQLLGWCHERGELLLVYEFMSNGSLDAHLFKENNFLIWEHRYKVAQGIASALLYLHEEWEKCVIHRDIKSSNVMLDSDFNAKLGDFGLARLVDHAIGSQTTVLAGTMGYMAPECAITGRASKESDVFSFGIVALEIACGRRPYNPNVEEGKMVMVEWVWELYGHGRLHEAADSKLYGSFENEPQQRQQIECLMVVGLWCAHPDINCRPSIRQAIHVMNFEAPLPVLPLQFPTLAYHHPLSVNRPIISSSFSSTQDSVVSQSIGNGFNSTNVLTSASQETTTSSTSFSASTSLLNTR* 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1296575 1298704 + Chy1G001920.1 Chy01g00192 217373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00192 709 ProSiteProfiles Protein kinase domain profile. 356 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00192 709 CDD STKc_IRAK 362 631 - -
Chy01g00192 709 Gene3D Phosphorylase Kinase; domain 1 341 432 - -
Chy01g00192 709 SMART serkin_6 356 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00192 709 CDD lectin_legume_LecRK_Arcelin_ConA 53 268 IPR001220 GO:0030246
Chy01g00192 709 Pfam Legume lectin domain 32 274 IPR001220 GO:0030246
Chy01g00192 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Chy01g00192 709 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 21 667 - -
Chy01g00192 709 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 272 IPR013320 -
Chy01g00192 709 PANTHER - 21 667 - -
Chy01g00192 709 ProSitePatterns Protein kinases ATP-binding region signature. 362 386 IPR017441 GO:0005524
Chy01g00192 709 SUPERFAMILY Protein kinase-like (PK-like) 341 668 IPR011009 -
Chy01g00192 709 Gene3D - 30 277 - -
Chy01g00192 709 Gene3D Transferase(Phosphotransferase) domain 1 433 646 - -
Chy01g00192 709 ProSitePatterns Legume lectins alpha-chain signature. 238 247 IPR000985 -
Chy01g00192 709 Pfam Protein kinase domain 358 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00192 - - - csv:101208539 1273.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00190 Chy-Chr1:1291140 Chy01g00192 Chy-Chr1:1296575 5.65E-27 dispersed
Chy01g00192 Chy-Chr1:1296575 Chy11g00474 Chy-Chr11:5054605 0 dispersed
Chy01g00191 Chy-Chr1:1293004 Chy01g00192 Chy-Chr1:1296575 2.41E-18 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g910 . . Bda06g01119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00684 Csa07g00613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00192 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70963 PF00069 Pkinase 2.10E-48 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00192 Chy_Chr01 FPKM 0.297491 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0