Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00228 ATGCCGGACTCCAATTTCGAAGACGCGATGTACGGTTCCGGAGTCATGAACAACGGCGCCCGGGATTTGGGTAACATTCAGAACAGAGTCGACGATGAAGATGACGACATCAACGGCGGGGAAGAGTCCATAGACAATCCTCAGATGCGGTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATTAACCGAGTTGAGGACGTTGTTCCTTCAACGTATGTTTCCGAGTCTGATTACAATCCTTTGACTGGAAACGGTGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAATTGGAAGTGTTCCCGTCAACCAACAGGGTGCCGATGGCTTTCCTGTCAGGTCGGTTCAACCACAAAGAGCTGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGCTACAGTGTGCGAAAAGAAGTAGCCCTCAGAATGCAGCGGAAGAAGGGACAGTTTATATCCTCTAAAGCTATAGGAGATGAACTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAGACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGACCTGCTGGTCCAAGGACTCTGTGCAATGCATGTGGGCTCAAATGGGCCAATAAGGGAATTTTGAGAGATCTTTCCAAGGTTTCAAACCCGAGCATTCAAGAACCCTCTGCGAAAGAGATTGAACAGAGCGACGGCGAGGCTGCTAATGAACACAATGCTGCAATTAATGTGGATATTCTCACTTCTAATGGAGACAAAAAACCACAAAAGACTAAAACAGAAATTTGA 951 47.0 MPDSNFEDAMYGSGVMNNGARDLGNIQNRVDDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVINRVEDVVPSTYVSESDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAIGSVPVNQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDELGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNPSIQEPSAKEIEQSDGEAANEHNAAINVDILTSNGDKKPQKTKTEI* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1570872 1576997 + Chy1G002280.1 Chy01g00228 217409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00228 316 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Chy01g00228 316 PANTHER GATA TRANSCRIPTION FACTOR 28 1 300 IPR045280 GO:0006355
Chy01g00228 316 MobiDBLite consensus disorder prediction 1 57 - -
Chy01g00228 316 SMART tify_2 86 121 IPR010399 -
Chy01g00228 316 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Chy01g00228 316 MobiDBLite consensus disorder prediction 267 316 - -
Chy01g00228 316 Pfam CCT motif 153 195 IPR010402 GO:0005515
Chy01g00228 316 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Chy01g00228 316 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Chy01g00228 316 PANTHER GATA TRANSCRIPTION FACTOR 18 1 300 - -
Chy01g00228 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Chy01g00228 316 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Chy01g00228 316 Pfam tify domain 90 120 IPR010399 -
Chy01g00228 316 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Chy01g00228 316 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Chy01g00228 316 Gene3D - 221 285 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00228 - - - csv:101222542 592.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00228 Chy-Chr1:1570872 Chy03g01317 Chy-Chr3:16151628 1.70E-63 dispersed
Chy01g00228 Chy-Chr1:1570872 Chy10g01148 Chy-Chr10:16403867 4.95E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g02108 . 1 230 Tify Gene Family AT3G21175 56.1 2.4e-58 222.2
Chy03g01317 . 45 267 Tify Gene Family AT4G24470 56.9 1.0e-65 247.3
Chy01g00228 . 89 267 Tify Gene Family AT4G24470 59.1 3.4e-48 189.1
Chy01g02108 . 1 265 Tify Gene Family AT1G51600 59.7 2.4e-80 295.8
Chy01g00228 . 86 274 Tify Gene Family AT1G51600 59.9 3.7e-52 202.2
Chy03g01317 . 362 537 Tify Gene Family AT1G51600 59.0 6.9e-51 198.0
Chy03g01317 . 45 267 Tify Gene Family AT4G24470 56.9 1.0e-65 247.3
Chy01g00228 . 89 267 Tify Gene Family AT4G24470 59.1 3.4e-48 189.1
Chy01g02108 . 1 265 Tify Gene Family AT1G51600 59.7 2.4e-80 295.8
Chy01g00228 . 86 274 Tify Gene Family AT1G51600 59.9 3.7e-52 202.2
Chy03g01317 . 362 537 Tify Gene Family AT1G51600 59.0 6.9e-51 198.0
Chy01g02108 . 1 230 Tify Gene Family AT3G21175 56.1 2.4e-58 222.2
Chy05g00381 . 1 180 Tify Gene Family AT4G14713 50.5 2.9e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17247 PF06203 CCT 1.70E-15 CL0281 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00228 Chy_Chr01 FPKM 0.0 0.0 38.872681 39.43959 0.0 0.0 0.782767 5.807432 6.257528 5.838393