Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00228 ATGCCGGACTCCAATTTCGAAGACGCGATGTACGGTTCCGGAGTCATGAACAACGGCGCCCGGGATTTGGGTAACATTCAGAACAGAGTCGACGATGAAGATGACGACATCAACGGCGGGGAAGAGTCCATAGACAATCCTCAGATGCGGTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATTAACCGAGTTGAGGACGTTGTTCCTTCAACGTATGTTTCCGAGTCTGATTACAATCCTTTGACTGGAAACGGTGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAATTGGAAGTGTTCCCGTCAACCAACAGGGTGCCGATGGCTTTCCTGTCAGGTCGGTTCAACCACAAAGAGCTGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGCTACAGTGTGCGAAAAGAAGTAGCCCTCAGAATGCAGCGGAAGAAGGGACAGTTTATATCCTCTAAAGCTATAGGAGATGAACTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAGACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGACCTGCTGGTCCAAGGACTCTGTGCAATGCATGTGGGCTCAAATGGGCCAATAAGGGAATTTTGAGAGATCTTTCCAAGGTTTCAAACCCGAGCATTCAAGAACCCTCTGCGAAAGAGATTGAACAGAGCGACGGCGAGGCTGCTAATGAACACAATGCTGCAATTAATGTGGATATTCTCACTTCTAATGGAGACAAAAAACCACAAAAGACTAAAACAGAAATTTGA 951 47.0 MPDSNFEDAMYGSGVMNNGARDLGNIQNRVDDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVINRVEDVVPSTYVSESDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAIGSVPVNQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDELGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNPSIQEPSAKEIEQSDGEAANEHNAAINVDILTSNGDKKPQKTKTEI* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1570872 1576997 + Chy1G002280.1 Chy01g00228 217409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00228 316 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Chy01g00228 316 PANTHER GATA TRANSCRIPTION FACTOR 28 1 300 IPR045280 GO:0006355
Chy01g00228 316 MobiDBLite consensus disorder prediction 1 57 - -
Chy01g00228 316 SMART tify_2 86 121 IPR010399 -
Chy01g00228 316 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Chy01g00228 316 MobiDBLite consensus disorder prediction 267 316 - -
Chy01g00228 316 Pfam CCT motif 153 195 IPR010402 GO:0005515
Chy01g00228 316 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Chy01g00228 316 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Chy01g00228 316 PANTHER GATA TRANSCRIPTION FACTOR 18 1 300 - -
Chy01g00228 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Chy01g00228 316 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Chy01g00228 316 Pfam tify domain 90 120 IPR010399 -
Chy01g00228 316 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Chy01g00228 316 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Chy01g00228 316 Gene3D - 221 285 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00228 Chy-Chr1:1570872 Chy03g01317 Chy-Chr3:16151628 1.70E-63 dispersed
Chy01g00228 Chy-Chr1:1570872 Chy10g01148 Chy-Chr10:16403867 4.95E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17247 PF06203 CCT 1.70E-15 CL0281 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00228 - - csv:101222542 592.423