Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00231 ATGGACAGTTCCTTGGCATCAATGGACGATTCTCCGACTAGTCCCCTCAAGGCTTTTGCTACCTTTCTTATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCACTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAATTTGCTGAGCTGATGGACGACGACCCACCTCTTGCTCGTTTTCTCTTCTCCCGTCCGACCGACTACTTGCGTGTTTTTGACGATGCAGCTGTTTGGGCTCATATGATCATTTTGGGTGATTCAAAAGGGTCCATGAATGGAGTTAAAAAAGACTTCATCCATGTTCGCATTAATGTAACTGGCTCTCCGCTGGAGTTTCCTGAGACTTTTCCTAGTATTGGGTCTGTCAGAGTGAAGCATCATGGAGTGCTTCTTACACTTAAAGGAACGGTAATCCGATCCGGGGCAATTAAGATGTACGAGGGTGAGAGATGGTATATCTGCCGGAAATGCAAGCACAAGTTTCCAGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGTCCTTCTCAGAGGTCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGTTCTGTCGTACGTCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTTTTGGGTGTGAGGTCCATTCCTCGTTCTGTTCTAGTCATTCTCAAGGATGACCTTGTTGATCTTGTTAAAGCTGGAGATGACGTTATTGTTTCAGGAGTATTGAGTGCAAAGTGGTCCCCAGACCTCAAAGATGTTCGGTGTGACCTTGATCCAATGCTAATTGCAAATCATGTGAGAAGAACCAATGAACTAAAGGCCGAGGTTGACATCCCTGATGATATAATTATGAAATTCACGCAGTTCTGGTCAGATTTCAAAGACACTCCTCTAAAAGGAAGAAATGCTATTCTAAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATATCTGGTACTAAAGTTCGAGGTGAATCTCATCTACTGTTGGTTGGCGATCCTGGTACTGGAAAGTCACAGTTCCTAAAATTTGCTGCCAAATTGAGCAACCGAGCTGTTATTACCACTGGTTTAGGAAGCACTAGCGCTGGACTAACTGTTGCTGCTGTTAAGGATGGAGGGGAATGGATGCTGGAGGCTGGGGCACTTGTATTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAGACTATAAGTGTGGCAAAGGCTGGTCTTGTGACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTATGACCCTGAACAACCTCTCTCTGTCAATACAACACTCTCCGGTCCCTTATTGAGCAGATTTGATATCGTTCTTGTGCTTTTGGATACAAAAAACCCTGAATGGGATGCAGTTGTTTCATCTCATATTCTCTATGAGAGCGAACAAGAAAAGGGAAAGCGTGACAATGATCTTTCAAATAACTGGCCTCTTACTATGCTTCGAAGATACATCCAATTCGTAAAAGGATACTTCAGACCGGTGCTGAATCAGGAGGCTGAACAAATTATCTCAAACTATTATCAGCTTCAAAGAAGATCAGCAATGGATAATGCAGCCAGGACAACGGTACGCATGCTTGAAAGCTTGATACGCTTAGCACAAGCACATGCACGTCTTATGTTTAGAAATGAGGTTACCCGGCTCGATGCCATTACGGCTATTTTGTGCATCGAATCATCCATGATGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAATTTTACCGAGAACCCAGATGAGGAATCCCGAGACATCAATTCTCATCCAACGGCTAGTGAACCAAAGCCGTCCGATCACTCGACCGTTGCTACTCCTAACGCTTAA 2007 44.15 MDSSLASMDDSPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARFLFSRPTDYLRVFDDAAVWAHMIILGDSKGSMNGVKKDFIHVRINVTGSPLEFPETFPSIGSVRVKHHGVLLTLKGTVIRSGAIKMYEGERWYICRKCKHKFPVYPELETRNSIQLPSFCPSQRSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVRSIPRSVLVILKDDLVDLVKAGDDVIVSGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMKFTQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILYESEQEKGKRDNDLSNNWPLTMLRRYIQFVKGYFRPVLNQEAEQIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMMTSALVDSVGNALHSNFTENPDEESRDINSHPTASEPKPSDHSTVATPNA* 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1590255 1609963 - Chy1G002310.1 Chy01g00231 217412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00231 668 Pfam MCM OB domain 124 254 IPR033762 -
Chy01g00231 668 PANTHER DNA HELICASE MCM9 43 647 - -
Chy01g00231 668 Gene3D - 297 623 IPR027417 -
Chy01g00231 668 Pfam MCM P-loop domain 312 515 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00231 668 MobiDBLite consensus disorder prediction 650 668 - -
Chy01g00231 668 SUPERFAMILY Nucleic acid-binding proteins 43 261 IPR012340 -
Chy01g00231 668 ProSiteProfiles MCM family domain profile. 310 513 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00231 668 SMART mcm 118 619 IPR031327 GO:0003677|GO:0005524|GO:0032508
Chy01g00231 668 Pfam MCM AAA-lid domain 536 617 IPR041562 -
Chy01g00231 668 Gene3D - 124 254 IPR012340 -
Chy01g00231 668 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 43 647 IPR031327 GO:0003677|GO:0005524|GO:0032508
Chy01g00231 668 MobiDBLite consensus disorder prediction 634 668 - -
Chy01g00231 668 SMART AAA_5 352 501 IPR003593 -
Chy01g00231 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 623 IPR027417 -
Chy01g00231 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 437 450 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00231 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 460 472 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00231 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 487 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00231 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 351 366 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00231 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 409 423 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy01g00231 668 Gene3D - 149 205 - -
Chy01g00231 668 CDD MCM9 313 617 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00231 Chy-Chr1:1590255 Chy04g01347 Chy-Chr4:20103179 5.67E-80 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00231 K10738 - csv:101205171 1244.95