Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00254 ATGGCTGACACAGCCTATATTCATGCAGATATCGAGCAGTTATTGAAAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTACACTAAGTTTCGTATTGCTTCAGAGCCTCCAGATAGACCATCAAGTGGGTCGCTTTTTCTTTTTGACCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGCTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATGTTGGAGCTGTCGTTGAGACTGATGAGGTTTCAACAAGTTCACAGAAGAGTAGAAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCGACTAGCACTTTGACATCATTTTGTGAAGATGCTGATAATGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTCACCAAAAATGGGAAATGGTCTTCTGGTGAATAAACCAGATGCTGGTCAATCAAATTTTTATTTTCCGCATTCCTCTTCGAACAACGCTGAAGCTTGGTCAACAGTTCCTGCTGTGGATTATGTAACACAAGTCCAAAAAGATGGACTTGGGGGTAACGGTGGTGATACTAGTATGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCATCAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCAATTGAACCTCTGCCTTCTGGAATTGTCTTTGGACAAGAGAATTCAACTCCTGACAAGCTTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGTTCTCTGGCAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCGAAAGAGCACGTCGATCATTTTCCAGATTTGTATTCAGTTTGTGACATAGATAGCAGGTTAACTGCGCATAAATCTCACGATGCAACTTTTGGAAGTGGTCATGAGATGTTTTGTGCTCATCCTGGCAAACAAAATGAGGAGATTTTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATCGTATTCAGCTACGAGGTTGAGTTCTGACAATGATATGTCTAAAGAAGGTACTATCAGCTATTCTCTGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGAGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGACTTGGACCACTGTAGAATGTGGTGATATGGTTGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAGCTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACAGTTGCAGATTTAGACACTGAGGTTGTGGTTATAGGGAGGTTTATGGGGAACAATAATGGCACAAACTGCCATTGGTCATGTATGTTTGGGGAAGTTGAGGTGCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCATGCACCACCACACAGTGTTGGGCGAGTCCCCTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCGGGCTCTGCACAAGATGTAGATGTTACCGATATATACAATGGTGGTGCTACAGAAGAATTACGTATGCATTTGCGATTTGAGAGGTTACTGTCTCTTGAACCTTCAGATCCTTCAAATGACCTCTCTGAAAGTGCTTTGGAGAAGCAAAACTTAATCAGAGAGCTTATCACAATAAAGGAAGAAGATGATACTTATGGGGAAGATCCAAATCCTCAGAACGATCAAATTCAGCATCAAAGCAAGGAGTTCCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCACAAAGTTATTGAAGGTGGCAAAGGTCCTAATATATTGGATAGTGAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTCGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCAGGAGTGAGTATCAACTTTCGAGACATTAATGGATGGACTGCTCTTCATTGGGCAGCATTATGTGGCAGGGAGTTGACAGTTGGAACCCTTATAACACTGGATGCTTCTCCTGGACTGATGTCAGATCCTTCTCCAGAAGTTCCTTTAGGCATAGTGCCTGCAGATCTTGCATCTATTAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAGTTCCATATCAATGGCTGAGACAGTAGAAGATGGTGCGTCAGACGTTTCAAGGACGAAAGCTGTGCAAACTGTTTCTGAACGAAGGGCCACACCGGTAAATGATGGTTTCATGCCCGGCGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATACATCAGATATTAAGAGTGCAGTCATTTCAGAGGAAAAAATTATCAGAGTGTGGAACTGATGAATTTGGATCCTCAGATAATAGTATTCTTTCATTTATGAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAACCCAGCTCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATTGTCTGGTCGGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGCAGTGGTTTGCGAGGCTTCCGATCAGATGCAGTTGCCAAGGATCCACCCTCCTTGATGGCACCACCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCGCAGTATCCTGAGGGACGAGACCAATACCGTAGACTTCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTGCTATGGTTGTTACTAGTACTTCAGAAGAGGTAATAGTAGGCGATGACATGATTGATATTGACACACTGCTGGATGACGATGCTTTGATGTCTATGACATTTGATTGA 3267 42.61 MADTAYIHADIEQLLKEAKHRWLRPAEICEILRNYTKFRIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNVGAVVETDEVSTSSQKSRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADNEDTYQATSRFHSFPTSPKMGNGLLVNKPDAGQSNFYFPHSSSNNAEAWSTVPAVDYVTQVQKDGLGGNGGDTSMMGSQKTLSSASWEEILHQCTTGFQTVPSHVLTSSIEPLPSGIVFGQENSTPDKLLTSNSAIKEDFGSSLAMTSNWQVPFEDNTLSFSKEHVDHFPDLYSVCDIDSRLTAHKSHDATFGSGHEMFCAHPGKQNEEILPNLELQFKEGESYSATRLSSDNDMSKEGTISYSLTLKQSLIDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLTWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTVADLDTEVVVIGRFMGNNNGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVDVTDIYNGGATEELRMHLRFERLLSLEPSDPSNDLSESALEKQNLIRELITIKEEDDTYGEDPNPQNDQIQHQSKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDSEGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALHWAALCGRELTVGTLITLDASPGLMSDPSPEVPLGIVPADLASINGHKGISGFLAEAALTSYVSSISMAETVEDGASDVSRTKAVQTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIHQILRVQSFQRKKLSECGTDEFGSSDNSILSFMKARARKSGLSNNPAHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRSDAVAKDPPSLMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSAMVVTSTSEEVIVGDDMIDIDTLLDDDALMSMTFD* 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1748855 1757972 - Chy1G002540.1 Chy01g00254 217435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00254 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 910 961 IPR027417 -
Chy01g00254 1088 MobiDBLite consensus disorder prediction 143 183 - -
Chy01g00254 1088 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 7 1088 - -
Chy01g00254 1088 SMART iq_5 933 955 IPR000048 GO:0005515
Chy01g00254 1088 SMART iq_5 910 932 IPR000048 GO:0005515
Chy01g00254 1088 Gene3D - 911 958 - -
Chy01g00254 1088 ProSiteProfiles IQ motif profile. 911 940 IPR000048 GO:0005515
Chy01g00254 1088 Gene3D Immunoglobulins 495 590 IPR013783 -
Chy01g00254 1088 SMART CG_1_2 14 132 IPR005559 GO:0003677
Chy01g00254 1088 Pfam IPT/TIG domain 501 574 IPR002909 -
Chy01g00254 1088 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677
Chy01g00254 1088 ProSiteProfiles IQ motif profile. 934 958 IPR000048 GO:0005515
Chy01g00254 1088 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 7 1088 - -
Chy01g00254 1088 Pfam IQ calmodulin-binding motif 936 955 IPR000048 GO:0005515
Chy01g00254 1088 Pfam IQ calmodulin-binding motif 912 931 IPR000048 GO:0005515
Chy01g00254 1088 SUPERFAMILY E set domains 502 586 IPR014756 -
Chy01g00254 1088 Pfam CG-1 domain 17 130 IPR005559 GO:0003677
Chy01g00254 1088 SUPERFAMILY Ankyrin repeat 681 796 IPR036770 -
Chy01g00254 1088 Gene3D - 670 857 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00254 Chy-Chr1:1748855 Chy08g00678 Chy-Chr8:14639238 2.91E-59 dispersed
Chy01g00254 Chy-Chr1:1748855 Chy01g00551 Chy-Chr1:3948107 7.30E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17248 PF03859 CG-1 8.30E-51 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00254 K21596 - csv:101203707 2105.49