Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00254 ATGGCTGACACAGCCTATATTCATGCAGATATCGAGCAGTTATTGAAAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTACACTAAGTTTCGTATTGCTTCAGAGCCTCCAGATAGACCATCAAGTGGGTCGCTTTTTCTTTTTGACCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGCTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATGTTGGAGCTGTCGTTGAGACTGATGAGGTTTCAACAAGTTCACAGAAGAGTAGAAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCGACTAGCACTTTGACATCATTTTGTGAAGATGCTGATAATGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTCACCAAAAATGGGAAATGGTCTTCTGGTGAATAAACCAGATGCTGGTCAATCAAATTTTTATTTTCCGCATTCCTCTTCGAACAACGCTGAAGCTTGGTCAACAGTTCCTGCTGTGGATTATGTAACACAAGTCCAAAAAGATGGACTTGGGGGTAACGGTGGTGATACTAGTATGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCATCAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCAATTGAACCTCTGCCTTCTGGAATTGTCTTTGGACAAGAGAATTCAACTCCTGACAAGCTTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGTTCTCTGGCAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCGAAAGAGCACGTCGATCATTTTCCAGATTTGTATTCAGTTTGTGACATAGATAGCAGGTTAACTGCGCATAAATCTCACGATGCAACTTTTGGAAGTGGTCATGAGATGTTTTGTGCTCATCCTGGCAAACAAAATGAGGAGATTTTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATCGTATTCAGCTACGAGGTTGAGTTCTGACAATGATATGTCTAAAGAAGGTACTATCAGCTATTCTCTGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGAGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGACTTGGACCACTGTAGAATGTGGTGATATGGTTGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAGCTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACAGTTGCAGATTTAGACACTGAGGTTGTGGTTATAGGGAGGTTTATGGGGAACAATAATGGCACAAACTGCCATTGGTCATGTATGTTTGGGGAAGTTGAGGTGCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCATGCACCACCACACAGTGTTGGGCGAGTCCCCTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCGGGCTCTGCACAAGATGTAGATGTTACCGATATATACAATGGTGGTGCTACAGAAGAATTACGTATGCATTTGCGATTTGAGAGGTTACTGTCTCTTGAACCTTCAGATCCTTCAAATGACCTCTCTGAAAGTGCTTTGGAGAAGCAAAACTTAATCAGAGAGCTTATCACAATAAAGGAAGAAGATGATACTTATGGGGAAGATCCAAATCCTCAGAACGATCAAATTCAGCATCAAAGCAAGGAGTTCCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCACAAAGTTATTGAAGGTGGCAAAGGTCCTAATATATTGGATAGTGAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTCGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCAGGAGTGAGTATCAACTTTCGAGACATTAATGGATGGACTGCTCTTCATTGGGCAGCATTATGTGGCAGGGAGTTGACAGTTGGAACCCTTATAACACTGGATGCTTCTCCTGGACTGATGTCAGATCCTTCTCCAGAAGTTCCTTTAGGCATAGTGCCTGCAGATCTTGCATCTATTAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAGTTCCATATCAATGGCTGAGACAGTAGAAGATGGTGCGTCAGACGTTTCAAGGACGAAAGCTGTGCAAACTGTTTCTGAACGAAGGGCCACACCGGTAAATGATGGTTTCATGCCCGGCGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATACATCAGATATTAAGAGTGCAGTCATTTCAGAGGAAAAAATTATCAGAGTGTGGAACTGATGAATTTGGATCCTCAGATAATAGTATTCTTTCATTTATGAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAACCCAGCTCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATTGTCTGGTCGGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGCAGTGGTTTGCGAGGCTTCCGATCAGATGCAGTTGCCAAGGATCCACCCTCCTTGATGGCACCACCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCGCAGTATCCTGAGGGACGAGACCAATACCGTAGACTTCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTGCTATGGTTGTTACTAGTACTTCAGAAGAGGTAATAGTAGGCGATGACATGATTGATATTGACACACTGCTGGATGACGATGCTTTGATGTCTATGACATTTGATTGA 3267 42.61 MADTAYIHADIEQLLKEAKHRWLRPAEICEILRNYTKFRIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNVGAVVETDEVSTSSQKSRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADNEDTYQATSRFHSFPTSPKMGNGLLVNKPDAGQSNFYFPHSSSNNAEAWSTVPAVDYVTQVQKDGLGGNGGDTSMMGSQKTLSSASWEEILHQCTTGFQTVPSHVLTSSIEPLPSGIVFGQENSTPDKLLTSNSAIKEDFGSSLAMTSNWQVPFEDNTLSFSKEHVDHFPDLYSVCDIDSRLTAHKSHDATFGSGHEMFCAHPGKQNEEILPNLELQFKEGESYSATRLSSDNDMSKEGTISYSLTLKQSLIDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLTWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTVADLDTEVVVIGRFMGNNNGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVDVTDIYNGGATEELRMHLRFERLLSLEPSDPSNDLSESALEKQNLIRELITIKEEDDTYGEDPNPQNDQIQHQSKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDSEGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALHWAALCGRELTVGTLITLDASPGLMSDPSPEVPLGIVPADLASINGHKGISGFLAEAALTSYVSSISMAETVEDGASDVSRTKAVQTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIHQILRVQSFQRKKLSECGTDEFGSSDNSILSFMKARARKSGLSNNPAHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRSDAVAKDPPSLMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSAMVVTSTSEEVIVGDDMIDIDTLLDDDALMSMTFD* 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1748855 1757972 - Chy1G002540.1 Chy01g00254 217435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00254 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 910 961 IPR027417 -
Chy01g00254 1088 MobiDBLite consensus disorder prediction 143 183 - -
Chy01g00254 1088 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 7 1088 - -
Chy01g00254 1088 SMART iq_5 933 955 IPR000048 GO:0005515
Chy01g00254 1088 SMART iq_5 910 932 IPR000048 GO:0005515
Chy01g00254 1088 Gene3D - 911 958 - -
Chy01g00254 1088 ProSiteProfiles IQ motif profile. 911 940 IPR000048 GO:0005515
Chy01g00254 1088 Gene3D Immunoglobulins 495 590 IPR013783 -
Chy01g00254 1088 SMART CG_1_2 14 132 IPR005559 GO:0003677
Chy01g00254 1088 Pfam IPT/TIG domain 501 574 IPR002909 -
Chy01g00254 1088 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677
Chy01g00254 1088 ProSiteProfiles IQ motif profile. 934 958 IPR000048 GO:0005515
Chy01g00254 1088 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 7 1088 - -
Chy01g00254 1088 Pfam IQ calmodulin-binding motif 936 955 IPR000048 GO:0005515
Chy01g00254 1088 Pfam IQ calmodulin-binding motif 912 931 IPR000048 GO:0005515
Chy01g00254 1088 SUPERFAMILY E set domains 502 586 IPR014756 -
Chy01g00254 1088 Pfam CG-1 domain 17 130 IPR005559 GO:0003677
Chy01g00254 1088 SUPERFAMILY Ankyrin repeat 681 796 IPR036770 -
Chy01g00254 1088 Gene3D - 670 857 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00254 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 2105.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00254 Chy-Chr1:1748855 Chy08g00678 Chy-Chr8:14639238 2.91E-59 dispersed
Chy01g00254 Chy-Chr1:1748855 Chy01g00551 Chy-Chr1:3948107 7.30E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g00254 . 10 1089 CAMTA Transcription Factor Family AT5G64220 53.0 2.6e-270 928.7
Chy11g01789 . 5 933 CAMTA Transcription Factor Family AT1G67310 52.7 4.1e-257 884.8
Chy11g01557 . 34 905 CAMTA Transcription Factor Family AT3G16940 54.1 1.5e-257 885.9
Chy11g01557 . 11 627 CAMTA Transcription Factor Family AT4G16150 53.2 2.7e-191 666.0
Chy01g00254 . 10 1089 CAMTA Transcription Factor Family AT5G64220 53.0 2.6e-270 928.7
Chy11g01789 . 5 933 CAMTA Transcription Factor Family AT1G67310 52.7 4.1e-257 884.8
Chy11g01557 . 11 627 CAMTA Transcription Factor Family AT4G16150 53.2 2.7e-191 666.0
Chy11g01557 . 34 905 CAMTA Transcription Factor Family AT3G16940 54.1 1.5e-257 885.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17248 PF03859 CG-1 8.30E-51 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00254 Chy_Chr01 FPKM 62.065514 64.965637 53.699551 55.064621 73.980537 72.7435 74.508705 85.656715 85.984978 81.660698