Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00273 ATGGGGTTCGTTTTACGGGTTTCTGCTAACGGGGAAGGTGATGCCCTAAATGCCTTCAAGCTGAGTCTGGTTGACCCCAATAATGCCTTGGAAAGTTGGAATTCCCTCCTTATGAATCCTTGTACATGGTTTCATATTACATGTGATGAAAATGAAAAAGTTGTACGTGTTGATCTTGGTAATGCGAACCTGTCTGGAAAACTGGTTCCAGAGCTTGATCAACTCACAAACATGCGGTACTTGGAACTCTACAGCAACAACATCAGTGGAACAATTCCAAAACGATTTGGAAATTTGAAAAACTTGGAGAGCTTGGATCTTTATTCTAACAGTTTATCTGGTCCAATACCTGATACTCTGGGCAAACTGACAAAACTAACTACCTTGCGTCTGAACAACAATAGCTTATCAGGAACCATTCCGATGTCTTTAACCACTGTTCCACTTCAACTTCTGGATCTTTCAAATAACCTTCTAACAGGAGTCATTCCTGTCAATGGCTCGTTTTCTCTTTTCACACCAATCAGTTTTGCCAATAATCCTCTTAAAAATTCTCCCTCTGCTCCTCCTCCCCAAAGGACAGATACACCACGAACATCTTCAGGTGATGGACCTAATGAAATCATAGTTGGAGCAATTGTTGCTGCTGCTTCTTTGTTGGTCATTGTGCCTGCTATTGCATTTACTCTTTGGCGACAAAGAACTCCACAGCATCATTTCTTTGATGTACCTGCTGAAGAAGATCCTGAAATTAACCTGGGGCAGCTAAAAAAATTTTCTCTACGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCCACAGAACATTTTAGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGATTGAAAGAGGAGCGAGCTGAGGTTGGAGAGCTTCAATTTCAGGCTGAAGTGGAGATGATCAGCATGGCTGTCCACCGTAATCTACTCCGTCTTAATGGATTTTGCATGTCACCAACTGAACGATTGCTTGTCTATCCTTATATGGCTAATGGAAGTCTAGCATCATGCTTAAGAGAGCGTAAGCAATCCCAACCACCACTCAACTGGGCAATACGTAAACAAGTTGCTTTAGGGGCTGCTCGAGGACTTGAATATTTACATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTATTAGATGATGAATATGTGGCTGTTGTTGGAGATTTTGGGTTGGCTAAACTCATGAACTACAAGGACACTCATGTGACAACTGCTGTTCGTGGAACAATTGGGCATATACCCCCGGAGTACCTCTCGTCTGGAAAGTCTTCTGAAAAAACTGACGTTTTTGGTTATGGAGTAATGCTTCTTGAACTCGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGTTAGCAAAAGATGACGATGTCATGTTGCTTGATTGGGTAAAAGGACTTCTAAATGATAAGAAACTGGCAACGTTGGTCGATCCCGATCTCGGAGGTAATTATGTAGAGGAAGAACTAGAGCAGGTAATTCAAATTGCTGTTCTTTGCACGCAAAGCTCCCCGGTGGAACGACCAAAAATGTCGGAGGTGATGCGAATGCTGGAAGGCGATGGTTTAGCTGAGAGATGGGAGGACTGGCAGAAAGAAGAGAGCTCACGCCAAAACTTCGATAATACGGTTCATTCTTACCCCCGGAGTAGACCTCCCCAGTTAATTGATTCCATTTCTCATCTTCCACCTGATGAGTTGTCTTCTCCAAGATGA 1797 42.74 MGFVLRVSANGEGDALNAFKLSLVDPNNALESWNSLLMNPCTWFHITCDENEKVVRVDLGNANLSGKLVPELDQLTNMRYLELYSNNISGTIPKRFGNLKNLESLDLYSNSLSGPIPDTLGKLTKLTTLRLNNNSLSGTIPMSLTTVPLQLLDLSNNLLTGVIPVNGSFSLFTPISFANNPLKNSPSAPPPQRTDTPRTSSGDGPNEIIVGAIVAAASLLVIVPAIAFTLWRQRTPQHHFFDVPAEEDPEINLGQLKKFSLRELQVATDYFSPQNILGKGGFGKVYKGRLADGSLVAVKRLKEERAEVGELQFQAEVEMISMAVHRNLLRLNGFCMSPTERLLVYPYMANGSLASCLRERKQSQPPLNWAIRKQVALGAARGLEYLHNHCDPKIIHRDVKAANILLDDEYVAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIPPEYLSSGKSSEKTDVFGYGVMLLELVTGQKAFDLARLAKDDDVMLLDWVKGLLNDKKLATLVDPDLGGNYVEEELEQVIQIAVLCTQSSPVERPKMSEVMRMLEGDGLAERWEDWQKEESSRQNFDNTVHSYPRSRPPQLIDSISHLPPDELSSPR* 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1911289 1920102 + Chy1G002730.1 Chy01g00273 217454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00273 598 MobiDBLite consensus disorder prediction 181 204 - -
Chy01g00273 598 ProSitePatterns Protein kinases ATP-binding region signature. 277 299 IPR017441 GO:0005524
Chy01g00273 598 Pfam Leucine rich repeat 77 136 IPR001611 GO:0005515
Chy01g00273 598 Gene3D Phosphorylase Kinase; domain 1 240 347 - -
Chy01g00273 598 Gene3D Transferase(Phosphotransferase) domain 1 348 565 - -
Chy01g00273 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 394 406 IPR008271 GO:0004672|GO:0006468
Chy01g00273 598 SUPERFAMILY L domain-like 11 185 - -
Chy01g00273 598 ProSiteProfiles Protein kinase domain profile. 271 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00273 598 SUPERFAMILY Protein kinase-like (PK-like) 251 546 IPR011009 -
Chy01g00273 598 SMART serkin_6 271 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00273 598 Pfam Leucine rich repeat N-terminal domain 9 49 IPR013210 -
Chy01g00273 598 MobiDBLite consensus disorder prediction 561 598 - -
Chy01g00273 598 Pfam Protein kinase domain 274 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00273 598 Gene3D Ribonuclease Inhibitor 9 188 IPR032675 -
Chy01g00273 598 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 598 - -
Chy01g00273 598 PANTHER BNAA08G11770D PROTEIN 3 598 IPR031048 GO:0004675|GO:0005102|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00273 Chy-Chr1:1911289 Chy07g00853 Chy-Chr7:11131536 0 dispersed
Chy11g01373 Chy-Chr11:20046737 Chy01g00273 Chy-Chr1:1911289 9.24E-53 dispersed
Chy01g00273 Chy-Chr1:1911289 Chy10g01091 Chy-Chr10:15982725 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70966 PF00069 Pkinase 1.40E-44 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00273 K13416 - csv:101216386 1102.04