Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00298 ATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCCGTGTTTCCTAGTATCGTTGGCAGACCACGTCATACTGGTGTGATGGTTGGAATGGGCCAGAAGGATGCCTATGTTGGTGATGAAGCTCAGTCAAAAAGAGGTATTCTTACATTGAAATACCCAATTGAACATGGAATTGTTAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCACCTGAAGAGCATCCGGTACTTCTTACTGAAGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTTGATGTACCTGCCATGTATGTTGCAATCCAGGCTGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGTCACACAGTGCCCATATACGAGGGGTTTTCGCTCCCTCACGCTATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGACGCTTTGATGAAAATCCTTACCGAAAGAGGTTACATGTTCACAACAACGGCAGAACGGGAAATTGTCCGTGATGTGAAGGAGAAACTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAAACAGCCAGGACTAGTTCGGCTATTGAGAAAAGCTATGAACTACCCGACGGGCAGGTGATTACGATCGGAGCTGAGAGATTCCGTTGCCCAGAAGTGTTGTTCCAACCATCTCTGATTGGGATGGAATCTTCCGGAATTCATGAAACCACTTACAACTCCATCATGAAGTGTGACGTTGATATCAGGAAGGACTTATATGGTAACATTGTCCTCAGTGGCGGTACAACAATGTTCCCAGGCATTGCTGATCGTATGAGCAAAGAAATCACAGCTCTCGCTCCCAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCCGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACGAAGGCTGAATATGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTAA 1134 46.38 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESSGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2110223 2112785 - Chy1G002980.1 Chy01g00298 217479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00298 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Chy01g00298 377 SMART actin_3 7 377 IPR004000 -
Chy01g00298 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Chy01g00298 377 Gene3D - 140 340 - -
Chy01g00298 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Chy01g00298 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Chy01g00298 377 PANTHER ACTIN 1 376 IPR004000 -
Chy01g00298 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Chy01g00298 377 PANTHER ACTIN-2-LIKE 1 376 - -
Chy01g00298 377 Gene3D - 10 371 - -
Chy01g00298 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Chy01g00298 377 Pfam Actin 5 377 IPR004000 -
Chy01g00298 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Chy01g00298 377 PRINTS Actin signature 28 37 IPR004000 -
Chy01g00298 377 PRINTS Actin signature 51 62 IPR004000 -
Chy01g00298 377 PRINTS Actin signature 63 85 IPR004000 -
Chy01g00298 377 PRINTS Actin signature 117 130 IPR004000 -
Chy01g00298 377 PRINTS Actin signature 142 161 IPR004000 -
Chy01g00298 377 PRINTS Actin signature 238 254 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00298 Chy-Chr1:2110223 Chy04g01779 Chy-Chr4:24120671 0 dispersed
Chy01g00298 Chy-Chr1:2110223 Chy02g01031 Chy-Chr2:7030507 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00298 K10355 - csv:101214459 757.673