Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00307 ATGGACAACATTACTGCTCAATTAAAGCGAGGTATCTCCCGCCAATTCTCCACCGGTTCTTTACGCCGTACCTTAAGTCGTCAGTTCACCCGTCAATCCTCTCTTGATCCTAGAAGGAACAATTTGAGATTTAGCTTTGGGAGGCAATCTTCTTTGGACCCTATTCGCCGCTGTCCCGATGAAGATAATGAGCTTTCTATTCCTGACAATTTGGATTCCACCATGCAGCTTCTCTTTATGGCTTGCCGTGGCGATGTTAGAGGTGTTGAGGATTTGCTTAATGATGGTACTGATGTTAATAGTATTGATTTGGATGGCCGTACTGCTTTGCATATTGCTGCCTGTGAAGGTCATGCTGCTGTTGTTAAGCTCTTGCTCAGTCGTAAGGCTAATATTGATGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCAGATGCTAAATATTATGGAAATACAGAGATTTACAATATTCTCAAGGCACGAGGAGCAAAAGTTCCGAAATTTAGGAAAACACCAATGACTGTTGCAAATCCTAGGGAAGTTCCAGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGAAGGAGTGATGGTATATCAAAGGGGGCATATCAAGTTGCCAAATGGAATGGTACAAAAGTCTCTGTGAAGATTCTTGATAAAGATTGTTATTGTAACCCAGATTCTATAAATGCATTCAAACATGAGTTGACATTATTGGAAAAGGTCCGACATCCCAATGTAGTTCAGTTTGTTGGTGCCGTTACCCAGAATTTGCCAATGATGATTGTTTCTGAATACCATCCGAAGGGTGATTTAGGGTGCTATCTTCAAAAGAAAGGTCGTTTATCTCCATCTAAAGCCTTAAGATTTGCCCTCGATGTCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCAGATCCAATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAAGTTGCTGGATTTGGCTTGATAAGATTGTCTAAAATGTCACAGGACAAAGCAAAACTAGCTCAACCAGTTGTTATGGACTATTCAAACTTGTACTTAGCACCCGAAATTTACAACGATGAAATATTTGACAGAAGCGTCGATTCGTTTTCATTCGGTCTCATTTTGTACGAGATGGTTGAAGGTATTCAACCATTCCATCCCAAGCCTCCAGAAGAGGTTACCAGAGCTATTTGTGCAGAAGGAAAGAGACCTCCATTTAAGATCAAATCAAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAGGAATGCTGGGATCCCGAACCTGTTATGAGGCCTACTTTCTCCGAAATTATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACAAGGGTGGTGGAAAGACACATTCAAACTTCCCTGGGAACATTTACTTGATATTTGGTCTGGAGACACCAACGATTGCTCACTTATACTGAGTTGA 1476 41.06 MDNITAQLKRGISRQFSTGSLRRTLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDEDNELSIPDNLDSTMQLLFMACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHAAVVKLLLSRKANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGISKGAYQVAKWNGTKVSVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDVARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKMSQDKAKLAQPVVMDYSNLYLAPEIYNDEIFDRSVDSFSFGLILYEMVEGIQPFHPKPPEEVTRAICAEGKRPPFKIKSKSYPPDLKELIEECWDPEPVMRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWEHLLDIWSGDTNDCSLILS* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2195586 2200211 + Chy1G003070.1 Chy01g00307 217488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00307 491 SMART ANK_2a 73 101 IPR002110 GO:0005515
Chy01g00307 491 SMART ANK_2a 105 134 IPR002110 GO:0005515
Chy01g00307 491 SMART ANK_2a 138 167 IPR002110 GO:0005515
Chy01g00307 491 Pfam Protein tyrosine and serine/threonine kinase 201 450 IPR001245 GO:0004672|GO:0006468
Chy01g00307 491 Gene3D - 49 184 IPR036770 -
Chy01g00307 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Chy01g00307 491 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 33 471 - -
Chy01g00307 491 Gene3D Transferase(Phosphotransferase) domain 1 269 469 - -
Chy01g00307 491 PIRSF ILK 8 472 - -
Chy01g00307 491 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Chy01g00307 491 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 471 - -
Chy01g00307 491 SUPERFAMILY Ankyrin repeat 60 176 IPR036770 -
Chy01g00307 491 SMART serkin_6 193 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00307 491 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
Chy01g00307 491 CDD STKc_MAP3K-like 199 451 - -
Chy01g00307 491 Pfam Ankyrin repeats (3 copies) 80 165 IPR002110 GO:0005515
Chy01g00307 491 Gene3D Phosphorylase Kinase; domain 1 188 268 - -
Chy01g00307 491 SUPERFAMILY Protein kinase-like (PK-like) 201 451 IPR011009 -
Chy01g00307 491 ProSiteProfiles Protein kinase domain profile. 189 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00307 Chy-Chr1:2195586 Chy11g00991 Chy-Chr11:13942694 3.77E-136 dispersed
Chy05g00170 Chy-Chr5:1330516 Chy01g00307 Chy-Chr1:2195586 5.40E-17 transposed
Chy07g01120 Chy-Chr7:16111719 Chy01g00307 Chy-Chr1:2195586 2.40E-09 transposed
Chy01g00307 Chy-Chr1:2195586 Chy12g00047 Chy-Chr12:415459 6.92E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70967 PF07714 PK_Tyr_Ser-Thr 7.30E-50 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00307 - - csv:101213574 959.518