Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00315 ATGGGGCCATCAGTTTGCAATTACTTTGGAGTGTACTGTGCTCCATCTCTCGATGACCCAAAAATCCAAGTCGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTATCAGACCTTGCTCTGCTTCATCTCAATAGTAACAGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTGGATTTAAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTTGTTCTTCACCTTCCAAAATTAAAATATCTTGATCTTCGATTCAACGAATTTGAAGGTTCAATTCCCTCTGAACTCTTCAACAAAACCCTTGACGCCATTTTTATAAACAGCAATCGTTTCACCAACATTATCCCGCGAAACATCGGTGGAAAATCAGCTTCTGTAATTGTTTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCAACCATTGCAAGTTTTGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCAGGCTGTTTGCCACAAGAAATTGGGTTTTTGTATAAATTGAAGGTATTGGATGTGAGTTTCAACAAACTAATGGGTCCCTTACCTTATAGTTTAACTGGGTTAGCTCAATTAGAGCAATTGAATTTAGCCCATAATATGTTTAGTGGGAATTTATACGAAGGGATCTGTAGCCTTCCGAATTTGGAGAATGTGACAGTTGCTTACAATTACTTCTGTGAAGAAGTAGGGGTTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGGCGGAATTGTTTGCCGGAGAAGGCGTTTCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGATTGTTTTGAGCATCCGTGCGGCGGGGGCGGGGAAGGAGGAGGTTATCGTTCTAGTATTGCGGCGGTTCCGATGCCGGCTCCGACGCCTTATTCCGTTGTTGCCCCTTCGCACTTGTGA 1002 43.01 MGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLSDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPKLKYLDLRFNEFEGSIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLMGPLPYSLTGLAQLEQLNLAHNMFSGNLYEGICSLPNLENVTVAYNYFCEEVGVCRNLTAKGIAFDDRRNCLPEKAFQRSKKECSAVVERPVDCFEHPCGGGGEGGGYRSSIAAVPMPAPTPYSVVAPSHL* 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2257222 2258223 - Chy1G003150.1 Chy01g00315 217496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00315 333 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 330 - -
Chy01g00315 333 SUPERFAMILY L domain-like 14 253 - -
Chy01g00315 333 Pfam Leucine rich repeat 49 106 IPR001611 GO:0005515
Chy01g00315 333 Gene3D Ribonuclease Inhibitor 2 141 IPR032675 -
Chy01g00315 333 Gene3D Ribonuclease Inhibitor 142 274 IPR032675 -
Chy01g00315 333 PANTHER EXTENSIN-LIKE PROTEIN 1 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00315 - - - csv:101218757 637.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00315 Chy-Chr1:2257222 Chy06g00552 Chy-Chr6:3765008 7.70E-122 dispersed
Chy01g00315 Chy-Chr1:2257222 Chy02g01174 Chy-Chr2:8415487 6.54E-92 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g01360 . 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 61.1 1.3e-40 165.2
Chy02g01907 . 54 221 Leucine-rich Repeat extension Gene Families AT1G62440 70.2 2.2e-40 164.5
Chy02g01907 . 25 396 Leucine-rich Repeat extension Gene Families AT4G13340 75.3 2.8e-64 243.8
Chy05g01360 . 40 423 Leucine-rich Repeat extension Gene Families AT4G13340 73.5 1.8e-63 241.1
Chy11g01657 . 14 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.2 5.2e-39 159.8
Chy02g01907 . 22 391 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 3.7e-70 262.7
Chy05g01360 . 47 419 Leucine-rich Repeat extension Gene Families AT3G24480 73.3 5.4e-69 258.8
Chy11g01657 . 26 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.7 3.8e-38 156.4
Chy06g00552 . 15 369 Leucine-rich Repeat extension Gene Families AT3G22800 65.3 4.4e-52 202.6
Chy01g00315 . 2 301 Leucine-rich Repeat extension Gene Families AT3G22800 64.8 1.5e-36 151.0
Chy02g01907 . 38 396 Leucine-rich Repeat extension Gene Families AT5G25550 62.6 7.8e-40 161.8
Chy05g01360 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 3.3e-38 156.4
Chy06g00552 . 27 365 Leucine-rich Repeat extension Gene Families AT5G25550 65.1 9.6e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00315 Chy_Chr01 FPKM 5.876016 5.176531 32.507202 30.412022 42.914135 36.094082 47.498714 3.319625 3.19731 3.136564