Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00319 ATGTCTTCTGATTCACCACGCTTTTCCTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCATTTAATGGTGAGGATGAATTAGAGGAAGATGGGGATCCTTATTCTTCAGATCATTTTCGGATGTATGAGTTTAAGGTAAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCCTTTGCTCATCCTGGAGAGAAGGCACGACGCCGTGATCCTCGTCGCTTTCATTACTCTGGTACCATGTGTCCGGAGTTTCGTCGCGCCGGTTGTGGTCGTGGCGATGGATGTGAGTTCGCTCATGGAGTTTTTGAGTGTTGGCTTCATCCGGCCAGGTATCGGACTGAAGCTTGTAAAGATGGAAAGAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCACCTCGTGAGCTTCGTCTTTTGCCTCCTGTCAGTAATTTCCAAAGCGGCTCTTGCTCTTCGCCCAATAGTAAACGAACTTCTTCTTCTCTTAGATCTCCCTCTACTGCTTCTGCTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCGCTACTTCCTCACCCACTTCTACGCTTTTCGGAATGTCTCACCTATCTCCGCCGCACTCTCCCCCGCACTCGCCGGGAAAACCTATAAACGGATTTTCCCCGATTTCCAGGTACAATCCTGATCAGTCTAAGTTAAATGGAGTTTTGAGCTATAAAGATGCACTGACTGAGCTCATGAGCTCAATCGAATCTATGAATATGGATGACGCCAATGCCACTTTAGCCGCCGCCGCCGCCGCCGCTTCCGGTCCAAGACAAACAATCCCTTGGATCGATGTTTCGTCTCTCCACAATGAAGATCAACTGCAGTTCGTTCTCTCACCTTCTACTCCAAATGTCTCCACCGCGTCAGTGAATTTTTCCATTGAAAACAATAATAATAATGGATGGGCCTCCACCTCCGCCTCGGCCTCGGCCTTTGCCTCCGACCCGGATCTGGGATGGGTTAATGATCTGCTGATGTAA 1029 48.1 MSSDSPRFSFAVESLLQKFLPFNGEDELEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRAGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQSGSCSSPNSKRTSSSLRSPSTASASNHCCLFCHCGGAAATSSPTSTLFGMSHLSPPHSPPHSPGKPINGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNMDDANATLAAAAAAASGPRQTIPWIDVSSLHNEDQLQFVLSPSTPNVSTASVNFSIENNNNNGWASTSASASAFASDPDLGWVNDLLM* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2293137 2294165 + Chy1G003190.1 Chy01g00319 217500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00319 342 ProSiteProfiles Zinc finger C3H1-type profile. 80 106 IPR000571 GO:0046872
Chy01g00319 342 PANTHER UNKEMPT FAMILY MEMBER 15 341 IPR045234 -
Chy01g00319 342 SMART c3hfinal6 79 105 IPR000571 GO:0046872
Chy01g00319 342 SMART c3hfinal6 114 137 IPR000571 GO:0046872
Chy01g00319 342 Gene3D - 78 142 - -
Chy01g00319 342 MobiDBLite consensus disorder prediction 202 221 - -
Chy01g00319 342 MobiDBLite consensus disorder prediction 148 168 - -
Chy01g00319 342 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 15 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00319 Chy-Chr1:2293137 Chy07g00223 Chy-Chr7:1831517 7.50E-65 dispersed
Chy01g00319 Chy-Chr1:2293137 Chy02g01185 Chy-Chr2:8505957 3.45E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17252 None None None None Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00319 K23047 - csv:101211149 621.313