Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy01g00319 | ATGTCTTCTGATTCACCACGCTTTTCCTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCATTTAATGGTGAGGATGAATTAGAGGAAGATGGGGATCCTTATTCTTCAGATCATTTTCGGATGTATGAGTTTAAGGTAAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCCTTTGCTCATCCTGGAGAGAAGGCACGACGCCGTGATCCTCGTCGCTTTCATTACTCTGGTACCATGTGTCCGGAGTTTCGTCGCGCCGGTTGTGGTCGTGGCGATGGATGTGAGTTCGCTCATGGAGTTTTTGAGTGTTGGCTTCATCCGGCCAGGTATCGGACTGAAGCTTGTAAAGATGGAAAGAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCACCTCGTGAGCTTCGTCTTTTGCCTCCTGTCAGTAATTTCCAAAGCGGCTCTTGCTCTTCGCCCAATAGTAAACGAACTTCTTCTTCTCTTAGATCTCCCTCTACTGCTTCTGCTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCGCTACTTCCTCACCCACTTCTACGCTTTTCGGAATGTCTCACCTATCTCCGCCGCACTCTCCCCCGCACTCGCCGGGAAAACCTATAAACGGATTTTCCCCGATTTCCAGGTACAATCCTGATCAGTCTAAGTTAAATGGAGTTTTGAGCTATAAAGATGCACTGACTGAGCTCATGAGCTCAATCGAATCTATGAATATGGATGACGCCAATGCCACTTTAGCCGCCGCCGCCGCCGCCGCTTCCGGTCCAAGACAAACAATCCCTTGGATCGATGTTTCGTCTCTCCACAATGAAGATCAACTGCAGTTCGTTCTCTCACCTTCTACTCCAAATGTCTCCACCGCGTCAGTGAATTTTTCCATTGAAAACAATAATAATAATGGATGGGCCTCCACCTCCGCCTCGGCCTCGGCCTTTGCCTCCGACCCGGATCTGGGATGGGTTAATGATCTGCTGATGTAA | 1029 | 48.1 | MSSDSPRFSFAVESLLQKFLPFNGEDELEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRAGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQSGSCSSPNSKRTSSSLRSPSTASASNHCCLFCHCGGAAATSSPTSTLFGMSHLSPPHSPPHSPGKPINGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNMDDANATLAAAAAAASGPRQTIPWIDVSSLHNEDQLQFVLSPSTPNVSTASVNFSIENNNNNGWASTSASASAFASDPDLGWVNDLLM* | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2293137 | 2294165 | + | Chy1G003190.1 | Chy01g00319 | 217500 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy01g00319 | 342 | ProSiteProfiles | Zinc finger C3H1-type profile. | 80 | 106 | IPR000571 | GO:0046872 | |
Chy01g00319 | 342 | PANTHER | UNKEMPT FAMILY MEMBER | 15 | 341 | IPR045234 | - | |
Chy01g00319 | 342 | SMART | c3hfinal6 | 79 | 105 | IPR000571 | GO:0046872 | |
Chy01g00319 | 342 | SMART | c3hfinal6 | 114 | 137 | IPR000571 | GO:0046872 | |
Chy01g00319 | 342 | Gene3D | - | 78 | 142 | - | - | |
Chy01g00319 | 342 | MobiDBLite | consensus disorder prediction | 202 | 221 | - | - | |
Chy01g00319 | 342 | MobiDBLite | consensus disorder prediction | 148 | 168 | - | - | |
Chy01g00319 | 342 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 | 15 | 341 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g00319 | Chy-Chr1:2293137 | Chy07g00223 | Chy-Chr7:1831517 | 7.50E-65 | dispersed | |
Chy01g00319 | Chy-Chr1:2293137 | Chy02g01185 | Chy-Chr2:8505957 | 3.45E-66 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17252 | None | None | None | None | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy01g00319 | K23047 | - | csv:101211149 | 621.313 |