Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00321 ATGGTTGCCAACCAAAAATCCCTTCCTTCTCTTTCCAACAACAATGCTAAAGATCTCCATTTCCGTGGCGTTCGTAAGAGGCCTTGGGGTCGATACGCCGCCGAGATCCGTGATCCCACCAAGAAAACCCGCGTTTGGCTCGGTACCTTCGACACCGCCGAGGACGCTGCACGTGCTTACGACACTGCCGCCCGTCTGTTTCGTGGCGCCAAGGCTAAAACCAACTTTCCCCTTCCTGACGACTTCATCGACGTTTCTCCTCACAACACCAACCAAAGTCCTAGTCCTACCAGCACCCTCGACTCCTCTTCCTCCTCCACCCATGAGAAAACCCCCTCTCCGGAGATCGCCCAAAGCTACGGCGTTGGAAGAACTTTTCCATTCGTTCAACCTCAGTTTTTACATGGGGGCGGCACCGTTCGTCCAGTTTTGTTCACGGACGTTTTTGGTAAAGCAGAATTCGTAGCTCATGGTTATCCTATACGGTTCGATCCGGCTACGGTGGATTTGACGTCGAGGTTCACCGGCGGGATCCAGACCGATACGAACTCATCGTCCTTGGTTGACTTCCGACCGGCCAAGGAAATTCTGAATCTCGATCTTAATCTGGCTCCGCCGGTCGATGCTTAA 630 53.33 MVANQKSLPSLSNNNAKDLHFRGVRKRPWGRYAAEIRDPTKKTRVWLGTFDTAEDAARAYDTAARLFRGAKAKTNFPLPDDFIDVSPHNTNQSPSPTSTLDSSSSSTHEKTPSPEIAQSYGVGRTFPFVQPQFLHGGGTVRPVLFTDVFGKAEFVAHGYPIRFDPATVDLTSRFTGGIQTDTNSSSLVDFRPAKEILNLDLNLAPPVDA* 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2312842 2313471 - Chy1G003210.1 Chy01g00321 217502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00321 209 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Chy01g00321 209 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Chy01g00321 209 PANTHER ERF DOMAIN PROTEIN 9-RELATED 12 129 - -
Chy01g00321 209 MobiDBLite consensus disorder prediction 85 114 - -
Chy01g00321 209 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Chy01g00321 209 Pfam AP2 domain 20 68 IPR001471 GO:0003700|GO:0006355
Chy01g00321 209 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Chy01g00321 209 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Chy01g00321 209 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Chy01g00321 209 MobiDBLite consensus disorder prediction 81 118 - -
Chy01g00321 209 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Chy01g00321 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 129 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g00321 Chy11g00957 CCT
Chy01g00321 Chy11g00957 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00321 Chy-Chr1:2312842 Chy02g00280 Chy-Chr2:1832881 1.80E-36 dispersed
Chy05g00521 Chy-Chr5:5656034 Chy01g00321 Chy-Chr1:2312842 9.86E-32 transposed
Chy06g01839 Chy-Chr6:22151171 Chy01g00321 Chy-Chr1:2312842 8.56E-33 transposed
Chy01g00321 Chy-Chr1:2312842 Chy12g00915 Chy-Chr12:14549570 1.98E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17253 PF00847 AP2 2.80E-13 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00321 K09286 - csv:101210659 380.948