Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00325 ATGGCCAGGCAGTCACAAAATGAAGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCACATTGCCGAGCCTGTTATGAAATTATATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTTTGGCAGTATCGAGATGCAGATCCTGGTTTTGGATCATCTCAGGCAAAGGAGATGTTGGATCATTTAGAAAGTGTTTTGGCAAACGAACCTGTTGCAGTCAAAAGCGGCCAATTTATCGTAGAAGTGAAACCGCAGGGGGTTACCAAAGGCCTCGTGGCTGAAAAGATCTTTTCATCAATGGCAGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGTATCGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGCATTGTCCAGTAACATTCTTTCTCCAACAACGTCGGTTTTTGCCTGCACTGTTGGACAAAAACCAAGCAAAGCCAAATATTATTTAGATGACACAGCCGAAGTAATAAGCATGCTTGAGTACCTGGCTGAAGCTTCTAGTCCATTACCATCCTCTGATGATGAAGAAGGTGAAAATGCTTCTTGA 597 42.88 MARQSQNEEWKICGQSSDFGWMHIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS* 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2333737 2334558 - Chy1G003250.1 Chy01g00325 217506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00325 198 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 2 192 IPR001830 GO:0003824|GO:0005992
Chy01g00325 198 TIGRFAM T6PP: trehalose-phosphatase 18 180 IPR003337 GO:0003824|GO:0005992
Chy01g00325 198 Gene3D - 59 192 IPR023214 -
Chy01g00325 198 SUPERFAMILY HAD-like 6 180 IPR036412 -
Chy01g00325 198 Pfam Trehalose-phosphatase 3 169 IPR003337 GO:0003824|GO:0005992
Chy01g00325 198 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 2 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00325 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101209914 391.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00325 Chy-Chr1:2333737 Chy02g00214 Chy-Chr2:1426609 2.82E-99 dispersed
Chy01g00325 Chy-Chr1:2333737 Chy10g00918 Chy-Chr10:14841488 9.90E-77 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy09g01295 . 21 572 Trehalose Biosynthesis Gene Families AT4G24040 56.7 9.2e-191 663.7
Chy02g00214 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1351.3
Chy06g02157 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1152.9
Chy10g00918 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1094.3
Chy01g00326 . 1 665 Trehalose Biosynthesis Gene Families AT1G06410 76.5 0.0e+00 1091.3
Chy02g02567 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.9 1.4e-303 1038.9
Chy01g00325 . 5 183 Trehalose Biosynthesis Gene Families AT1G06410 81.0 1.1e-77 288.5
Chy07g00463 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.1 1.3e-248 855.9
Chy12g00042 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.6 9.3e-242 833.2
Chy10g00918 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.3 0.0e+00 1347.8
Chy02g02567 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.6 0.0e+00 1208.4
Chy02g00214 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.6 0.0e+00 1110.1
Chy06g02157 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1108.6
Chy01g00326 . 1 664 Trehalose Biosynthesis Gene Families AT1G23870 60.7 7.8e-257 883.6
Chy01g00325 . 3 184 Trehalose Biosynthesis Gene Families AT1G23870 60.4 2.8e-57 220.7
Chy10g00918 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 72.6 0.0e+00 1328.5
Chy02g02567 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 67.7 0.0e+00 1227.6
Chy02g00214 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1083.2
Chy06g02157 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.9 0.0e+00 1080.9
Chy01g00326 . 1 661 Trehalose Biosynthesis Gene Families AT1G60140 59.5 1.5e-244 842.8
Chy01g00325 . 3 187 Trehalose Biosynthesis Gene Families AT1G60140 61.1 2.7e-60 230.7
Chy06g02157 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.4 0.0e+00 1268.8
Chy02g00214 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.6
Chy10g00918 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1109.0
Chy02g02567 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1092.8
Chy01g00326 . 1 666 Trehalose Biosynthesis Gene Families AT1G68020 62.5 1.0e-264 909.8
Chy01g00325 . 9 186 Trehalose Biosynthesis Gene Families AT1G68020 63.5 1.4e-61 235.0
Chy10g00918 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1194.5
Chy02g02567 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1105.5
Chy02g00214 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.7 4.4e-294 1007.3
Chy06g02157 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 8.4e-285 976.5
Chy01g00326 . 1 664 Trehalose Biosynthesis Gene Families AT1G70290 56.5 4.4e-225 778.1
Chy01g00325 . 3 193 Trehalose Biosynthesis Gene Families AT1G70290 60.4 1.1e-58 225.3
Chy07g00463 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.8 0.0e+00 1476.1
Chy12g00042 . 1 928 Trehalose Biosynthesis Gene Families AT1G78580 74.0 0.0e+00 1361.7
Chy10g00918 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 60.9 1.4e-306 1048.9
Chy02g00214 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.1 3.7e-299 1024.2
Chy02g02567 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.6 1.4e-298 1022.3
Chy06g02157 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 5.3e-298 1020.4
Chy01g00326 . 56 664 Trehalose Biosynthesis Gene Families AT2G18700 58.8 1.8e-229 792.7
Chy01g00325 . 3 183 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.5e-53 207.6
Chy06g02157 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1380.2
Chy02g00214 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.1 0.0e+00 1183.7
Chy10g00918 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.9
Chy02g02567 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.4 0.0e+00 1105.1
Chy01g00326 . 1 661 Trehalose Biosynthesis Gene Families AT4G17770 63.3 3.7e-267 917.9
Chy01g00325 . 3 191 Trehalose Biosynthesis Gene Families AT4G17770 61.9 1.1e-64 245.4
Chy07g00463 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.4 1.3e-303 1038.9
Chy12g00042 . 92 926 Trehalose Biosynthesis Gene Families AT4G27550 59.4 1.2e-288 989.2
Chy07g00463 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.8 0.0e+00 1476.1
Chy12g00042 . 1 928 Trehalose Biosynthesis Gene Families AT1G78580 74.0 0.0e+00 1361.7
Chy07g00463 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.1 1.3e-248 855.9
Chy12g00042 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.6 9.3e-242 833.2
Chy07g00463 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 2.9e-194 675.6
Chy12g00042 . 92 610 Trehalose Biosynthesis Gene Families AT1G17000 61.5 1.5e-190 663.3
Chy07g00463 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.4 1.3e-303 1038.9
Chy12g00042 . 92 926 Trehalose Biosynthesis Gene Families AT4G27550 59.4 1.2e-288 989.2
Chy06g02157 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1380.2
Chy02g00214 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.1 0.0e+00 1183.7
Chy10g00918 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.9
Chy02g02567 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.4 0.0e+00 1105.1
Chy01g00326 . 1 661 Trehalose Biosynthesis Gene Families AT4G17770 63.3 3.7e-267 917.9
Chy01g00325 . 3 191 Trehalose Biosynthesis Gene Families AT4G17770 61.9 1.1e-64 245.4
Chy06g02157 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.4 0.0e+00 1268.8
Chy02g00214 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.6
Chy10g00918 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1109.0
Chy02g02567 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1092.8
Chy01g00326 . 1 666 Trehalose Biosynthesis Gene Families AT1G68020 62.5 1.0e-264 909.8
Chy01g00325 . 9 186 Trehalose Biosynthesis Gene Families AT1G68020 63.5 1.4e-61 235.0
Chy02g00214 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1351.3
Chy06g02157 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1152.9
Chy10g00918 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1094.3
Chy01g00326 . 1 665 Trehalose Biosynthesis Gene Families AT1G06410 76.5 0.0e+00 1091.3
Chy02g02567 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.9 1.4e-303 1038.9
Chy01g00325 . 5 183 Trehalose Biosynthesis Gene Families AT1G06410 81.0 1.1e-77 288.5
Chy10g00918 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1194.5
Chy02g02567 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1105.5
Chy02g00214 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.7 4.4e-294 1007.3
Chy06g02157 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 8.4e-285 976.5
Chy01g00326 . 1 664 Trehalose Biosynthesis Gene Families AT1G70290 56.5 4.4e-225 778.1
Chy01g00325 . 3 193 Trehalose Biosynthesis Gene Families AT1G70290 60.4 1.1e-58 225.3
Chy10g00918 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.3 0.0e+00 1347.8
Chy02g02567 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.6 0.0e+00 1208.4
Chy02g00214 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.6 0.0e+00 1110.1
Chy06g02157 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1108.6
Chy01g00326 . 1 664 Trehalose Biosynthesis Gene Families AT1G23870 60.7 7.8e-257 883.6
Chy01g00325 . 3 184 Trehalose Biosynthesis Gene Families AT1G23870 60.4 2.8e-57 220.7
Chy10g00918 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 72.6 0.0e+00 1328.5
Chy02g02567 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 67.7 0.0e+00 1227.6
Chy02g00214 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1083.2
Chy06g02157 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.9 0.0e+00 1080.9
Chy01g00326 . 1 661 Trehalose Biosynthesis Gene Families AT1G60140 59.5 1.5e-244 842.8
Chy01g00325 . 3 187 Trehalose Biosynthesis Gene Families AT1G60140 61.1 2.7e-60 230.7
Chy10g00918 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 60.9 1.4e-306 1048.9
Chy02g00214 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.1 3.7e-299 1024.2
Chy02g02567 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.6 1.4e-298 1022.3
Chy06g02157 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 5.3e-298 1020.4
Chy01g00326 . 56 664 Trehalose Biosynthesis Gene Families AT2G18700 58.8 1.8e-229 792.7
Chy01g00325 . 3 183 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.5e-53 207.6
Chy09g01295 . 21 572 Trehalose Biosynthesis Gene Families AT4G24040 56.7 9.2e-191 663.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018566 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00325 Chy_Chr01 FPKM 6.188921 7.895742 0.331305 0.154631 0.0 0.382171 0.456635 0.0 0.0 0.0