Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00326 ATGATTTCTAGATCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAAGAAGCGATTTCCGCGGGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGACGATGATCAAGCCTACAGTGTCACGTCTGAAAACCCGTCCTCAATTTCGTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAACGAAGGGAGGATGATAATTCATGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGCTTACCAGAAGATATGGAGATTCTCTACGTTGGTTCGTTGAAAGTCGATATCCAACCAGAAGAACAAGATGAGGTCTCCCAGATTCTGTTGGAGAAATTTAGGTGTATTCCTGCATTTTTGCCTCCTCATATATTGGAAAAGTTTTATGATGGCTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGTTGCCATACTCTGCTGATCAGAAGGGTCGATTCGATCGCTCCATGTGGGAAGCTTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTCGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTACCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATTGGATTCCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGCAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTATGGCAGAACGATTGGGATAAAAATAATGCCTGTTGGTATTCATATGAGTCGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCCAAGACTAGGGAGCTCACGCAGCAATTTGCAGGGAAGACGGTGTTGCTTGGTGTTGATGATTTGGACATTTTCAAAGGTATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCAAAGTGGCAGGGGAAGGCTGTACTGATCCAAATTGTAAATCCTGCCAGAGGTAAGGGAAGAGATTTACAAGAAATAGAAGATGACATAAAAGAAAGCTGTAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTACGAGCCAATAGTACTTCTCGACAGGCATGTGCCGATAACTGAACGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTAACTGCTGTTAGAGATGGTATGAACCTAACTCCTTATGAGTACGTTGTATGTAGACAGGGAATATCCACCTCCCAAAAATGTTTGAACTTCAGCGGACCAAAAAAGAGCATGCTCGTCATATCTGAATTTATTGGGTGCTCTCCGTCACTGAGCGGAGCATTTCGTGTTAATCCATGGAATGTGGAAAAGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGGCTGATTCAGAGAAGGAGCTGCGACATGAGAAGCATTATCGTTACGTTGCCACACACGATGTCGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGAAGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTGTCAGTAGATGCCATTGTATCATCTTACAGTAGGGCCGAAAGTCGGGCCATTCTGTTGGACTATGATGGCACTGTGATGCCCCAAAACTCCATAAATAAGTCACCTAGTGCGCAGGTTATCTCTATCCTTAATACGCTTTGTGCAGATGCAAAAAACGTGGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGTCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGTTTGCTTCTACGATCTCTCTCAATCCTCTCCTTGACGTTAGTGGTGGGGTATAG 2037 42.37 MISRSYTNLLDLASGNFPAMEVKKKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEILYVGSLKVDIQPEEQDEVSQILLEKFRCIPAFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDDIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTSQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVEKTAEALNEAISMADSEKELRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSAQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRFASTISLNPLLDVSGGV* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2334885 2336921 - Chy1G003260.1 Chy01g00326 217507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00326 678 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Chy01g00326 678 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Chy01g00326 678 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Chy01g00326 678 Pfam Trehalose-phosphatase 593 662 IPR003337 GO:0003824|GO:0005992
Chy01g00326 678 SUPERFAMILY HAD-like 590 673 IPR036412 -
Chy01g00326 678 Gene3D Glycogen Phosphorylase B; 53 313 - -
Chy01g00326 678 Gene3D Glycogen Phosphorylase B; 314 527 - -
Chy01g00326 678 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 664 IPR001830 GO:0003824|GO:0005992
Chy01g00326 678 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 664 - -
Chy01g00326 678 Gene3D - 589 675 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00326 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101209914 1337.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00326 Chy-Chr1:2334885 Chy02g00214 Chy-Chr2:1426609 0 dispersed
Chy01g00326 Chy-Chr1:2334885 Chy10g00918 Chy-Chr10:14841488 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g130 . . . . . . . . Cmo11g01986 Cmo19g01042 . . . . Sed14g1529 Cpe15g00820 Cpe04g00803 Bhi05g01942 Tan02g0192 Cmetu04g0191 Lac12g0751 Hepe02g0118 . . . . . . . . . Cone3ag1433 Cone10ag1362 . . . Csa07g00478 . Cme01g00311 . . . . . . . . . . . Cma11g01907 Cma19g01006 . Car19g00792 . . . . . . . . . . . . . . . . . . Chy01g00326 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy09g01295 . 21 572 Trehalose Biosynthesis Gene Families AT4G24040 56.7 9.2e-191 663.7
Chy02g00214 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1351.3
Chy06g02157 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1152.9
Chy10g00918 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1094.3
Chy01g00326 . 1 665 Trehalose Biosynthesis Gene Families AT1G06410 76.5 0.0e+00 1091.3
Chy02g02567 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.9 1.4e-303 1038.9
Chy01g00325 . 5 183 Trehalose Biosynthesis Gene Families AT1G06410 81.0 1.1e-77 288.5
Chy07g00463 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.1 1.3e-248 855.9
Chy12g00042 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.6 9.3e-242 833.2
Chy10g00918 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.3 0.0e+00 1347.8
Chy02g02567 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.6 0.0e+00 1208.4
Chy02g00214 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.6 0.0e+00 1110.1
Chy06g02157 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1108.6
Chy01g00326 . 1 664 Trehalose Biosynthesis Gene Families AT1G23870 60.7 7.8e-257 883.6
Chy01g00325 . 3 184 Trehalose Biosynthesis Gene Families AT1G23870 60.4 2.8e-57 220.7
Chy10g00918 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 72.6 0.0e+00 1328.5
Chy02g02567 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 67.7 0.0e+00 1227.6
Chy02g00214 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1083.2
Chy06g02157 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.9 0.0e+00 1080.9
Chy01g00326 . 1 661 Trehalose Biosynthesis Gene Families AT1G60140 59.5 1.5e-244 842.8
Chy01g00325 . 3 187 Trehalose Biosynthesis Gene Families AT1G60140 61.1 2.7e-60 230.7
Chy06g02157 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.4 0.0e+00 1268.8
Chy02g00214 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.6
Chy10g00918 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1109.0
Chy02g02567 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1092.8
Chy01g00326 . 1 666 Trehalose Biosynthesis Gene Families AT1G68020 62.5 1.0e-264 909.8
Chy01g00325 . 9 186 Trehalose Biosynthesis Gene Families AT1G68020 63.5 1.4e-61 235.0
Chy10g00918 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1194.5
Chy02g02567 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1105.5
Chy02g00214 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.7 4.4e-294 1007.3
Chy06g02157 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 8.4e-285 976.5
Chy01g00326 . 1 664 Trehalose Biosynthesis Gene Families AT1G70290 56.5 4.4e-225 778.1
Chy01g00325 . 3 193 Trehalose Biosynthesis Gene Families AT1G70290 60.4 1.1e-58 225.3
Chy07g00463 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.8 0.0e+00 1476.1
Chy12g00042 . 1 928 Trehalose Biosynthesis Gene Families AT1G78580 74.0 0.0e+00 1361.7
Chy10g00918 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 60.9 1.4e-306 1048.9
Chy02g00214 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.1 3.7e-299 1024.2
Chy02g02567 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.6 1.4e-298 1022.3
Chy06g02157 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 5.3e-298 1020.4
Chy01g00326 . 56 664 Trehalose Biosynthesis Gene Families AT2G18700 58.8 1.8e-229 792.7
Chy01g00325 . 3 183 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.5e-53 207.6
Chy06g02157 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1380.2
Chy02g00214 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.1 0.0e+00 1183.7
Chy10g00918 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.9
Chy02g02567 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.4 0.0e+00 1105.1
Chy01g00326 . 1 661 Trehalose Biosynthesis Gene Families AT4G17770 63.3 3.7e-267 917.9
Chy01g00325 . 3 191 Trehalose Biosynthesis Gene Families AT4G17770 61.9 1.1e-64 245.4
Chy07g00463 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.4 1.3e-303 1038.9
Chy12g00042 . 92 926 Trehalose Biosynthesis Gene Families AT4G27550 59.4 1.2e-288 989.2
Chy07g00463 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.8 0.0e+00 1476.1
Chy12g00042 . 1 928 Trehalose Biosynthesis Gene Families AT1G78580 74.0 0.0e+00 1361.7
Chy07g00463 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.1 1.3e-248 855.9
Chy12g00042 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.6 9.3e-242 833.2
Chy07g00463 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 2.9e-194 675.6
Chy12g00042 . 92 610 Trehalose Biosynthesis Gene Families AT1G17000 61.5 1.5e-190 663.3
Chy07g00463 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.4 1.3e-303 1038.9
Chy12g00042 . 92 926 Trehalose Biosynthesis Gene Families AT4G27550 59.4 1.2e-288 989.2
Chy06g02157 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1380.2
Chy02g00214 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.1 0.0e+00 1183.7
Chy10g00918 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.9
Chy02g02567 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.4 0.0e+00 1105.1
Chy01g00326 . 1 661 Trehalose Biosynthesis Gene Families AT4G17770 63.3 3.7e-267 917.9
Chy01g00325 . 3 191 Trehalose Biosynthesis Gene Families AT4G17770 61.9 1.1e-64 245.4
Chy06g02157 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.4 0.0e+00 1268.8
Chy02g00214 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.6
Chy10g00918 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1109.0
Chy02g02567 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1092.8
Chy01g00326 . 1 666 Trehalose Biosynthesis Gene Families AT1G68020 62.5 1.0e-264 909.8
Chy01g00325 . 9 186 Trehalose Biosynthesis Gene Families AT1G68020 63.5 1.4e-61 235.0
Chy02g00214 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1351.3
Chy06g02157 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1152.9
Chy10g00918 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1094.3
Chy01g00326 . 1 665 Trehalose Biosynthesis Gene Families AT1G06410 76.5 0.0e+00 1091.3
Chy02g02567 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.9 1.4e-303 1038.9
Chy01g00325 . 5 183 Trehalose Biosynthesis Gene Families AT1G06410 81.0 1.1e-77 288.5
Chy10g00918 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1194.5
Chy02g02567 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1105.5
Chy02g00214 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.7 4.4e-294 1007.3
Chy06g02157 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 8.4e-285 976.5
Chy01g00326 . 1 664 Trehalose Biosynthesis Gene Families AT1G70290 56.5 4.4e-225 778.1
Chy01g00325 . 3 193 Trehalose Biosynthesis Gene Families AT1G70290 60.4 1.1e-58 225.3
Chy10g00918 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.3 0.0e+00 1347.8
Chy02g02567 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.6 0.0e+00 1208.4
Chy02g00214 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.6 0.0e+00 1110.1
Chy06g02157 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1108.6
Chy01g00326 . 1 664 Trehalose Biosynthesis Gene Families AT1G23870 60.7 7.8e-257 883.6
Chy01g00325 . 3 184 Trehalose Biosynthesis Gene Families AT1G23870 60.4 2.8e-57 220.7
Chy10g00918 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 72.6 0.0e+00 1328.5
Chy02g02567 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 67.7 0.0e+00 1227.6
Chy02g00214 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1083.2
Chy06g02157 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.9 0.0e+00 1080.9
Chy01g00326 . 1 661 Trehalose Biosynthesis Gene Families AT1G60140 59.5 1.5e-244 842.8
Chy01g00325 . 3 187 Trehalose Biosynthesis Gene Families AT1G60140 61.1 2.7e-60 230.7
Chy10g00918 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 60.9 1.4e-306 1048.9
Chy02g00214 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.1 3.7e-299 1024.2
Chy02g02567 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.6 1.4e-298 1022.3
Chy06g02157 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 5.3e-298 1020.4
Chy01g00326 . 56 664 Trehalose Biosynthesis Gene Families AT2G18700 58.8 1.8e-229 792.7
Chy01g00325 . 3 183 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.5e-53 207.6
Chy09g01295 . 21 572 Trehalose Biosynthesis Gene Families AT4G24040 56.7 9.2e-191 663.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00326 Chy_Chr01 FPKM 21.647345 21.33313 54.05843 53.894909 32.837688 44.370869 33.195759 69.49221 68.126823 64.438896