Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00328 ATGGACCGCCGTGTTCGTACAAACCCATTCCTCTCCGAAAAGGAAGATCCCGAAGCCACCTCCGACGACGGCTTACCCGAATCACCCTCCGACTGCAATGACTCAAAACCCACCGCTGCTCTACCTCCTAAAAAGAGTAGAAGGGGAGTGCAGAAGAGAGTGGTGTCCGTACCGATCGCTGACGTGGAAGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATTCATGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAAGGTTCTCCTTATCCCAGGGGATATTATCGATGTAGTAGTTCCAAGGGATGCCCAGCAAGAAAGCAAGTAGAGAGAAGCCGTGTGGATCCCACCAAGCTCGTTATTACCTACGCCTTCGACCACAACCACCAACTCCCGGTCACCAAATCTCACCACCACCACCACCACCACCACAATTCCTCCCCGTCCTCCGCCGTGATCGCCGCCGCATCAGCCGCAACCGACTTTCCCTCTCCAGGGAGCACTACGACGTCGTCCTCCACTTCCTCCGGCGACAACACCAACGCCGCTCCGTCGTCCCCGGCGGCGAAGTTTGAGGAGGCGGCTGCGGTTTTCGCGAGTCAGCCGGAATTGGAACTCGGGGACGACTCGCTGATGATAAAACCATGCATCGGAGATTTCGGGTGGTTGGGTGAGGTGGCGTATGACAGAATCCTGGAGGGCCCGATTTGCGGAGGTGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCCACTAGAGGAGATGACGAGGAGGAGTCGTTATTTGCAGATCTTGGGGAATTACCCGAAGGATCGGTGGTGTTCGGCCGACGGCGAACGGTCCAACCGAACGGACCGAACCGGACATGTGGCACAGTTTTAAACTGCTAG 903 56.04 MDRRVRTNPFLSEKEDPEATSDDGLPESPSDCNDSKPTAALPPKKSRRGVQKRVVSVPIADVEGSKSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPVTKSHHHHHHHHNSSPSSAVIAAASAATDFPSPGSTTTSSSTSSGDNTNAAPSSPAAKFEEAAAVFASQPELELGDDSLMIKPCIGDFGWLGEVAYDRILEGPICGGGDIFDDADVMVLSTRGDDEEESLFADLGELPEGSVVFGRRRTVQPNGPNRTCGTVLNC* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2345462 2347654 - Chy1G003280.1 Chy01g00328 217509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00328 300 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy01g00328 300 MobiDBLite consensus disorder prediction 137 156 - -
Chy01g00328 300 MobiDBLite consensus disorder prediction 1 78 - -
Chy01g00328 300 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 20 286 IPR044810 GO:0003700
Chy01g00328 300 PANTHER OS01G0750100 PROTEIN 20 286 - -
Chy01g00328 300 Gene3D WRKY domain 61 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy01g00328 300 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy01g00328 300 MobiDBLite consensus disorder prediction 1 21 - -
Chy01g00328 300 MobiDBLite consensus disorder prediction 164 189 - -
Chy01g00328 300 SMART WRKY_cls 74 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy01g00328 300 SUPERFAMILY WRKY DNA-binding domain 70 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy01g00328 300 MobiDBLite consensus disorder prediction 162 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00328 Chy-Chr1:2345462 Chy02g00062 Chy-Chr2:462320 2.38E-35 dispersed
Chy01g00328 Chy-Chr1:2345462 Chy12g00064 Chy-Chr12:562489 6.07E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17254 PF03106 WRKY 1.20E-24 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00328 - - csv:101209422 555.058