Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00353 ATGCACCTCCGCCCTGGGTACTTATGGAGTGTGATAATGTTGGTGAATTTTGTTGGGCTGGGGAAGTTTGTTCTCGTTGATTCAACTCAGCTGCTTCCAAACCGTACTACCGCAGCTTCGCATTGGCTCCCTGCCACCGCCACTTGGTATGGCAGCCCAGAAGGCGACGGCAGCGACGGTGGGGCATGTGGGTACGGTAGTTTGGTGGACGTGAAGCCATTCAAAGCAAGAGTAGGGGCAGTGAGTCCAATCCTATTCAAGGACGGGGAAGGGTGTGGTGCGTGCTACAAAGTTCGGTGCTTGGATCGAGCCATATGCGCCAGACGGGCCGTTACCATCATAGTAACCGATGAGTGTCCAGGTGGGTACTGCGCCAATGGCCGGACTCACTTCGACCTGAGTGGTGCCGCCTTCGGACGTATGGCAGTGGCTGGTGCAGGCAGCCGGCTCCGAGACAGAGGGGAATTGACCGTGGCGTACAGAAGGACTCCATGTAGGTACAGAGGAAAGAATATAGCGTTCCATGTGAATGAAGGTTCTACAGATCATTGGCTTTCGCTTTTGGTGGAGTTTGAGGATGGAGATGGAGATATTGGTTCTATGCAAATCAGACAAGCAAATTCAAAAGAGTGGATGGAGATGGCACATGTGTGGGGTGCAACATGGTGCATAAATGGAGGGCCTTTAAAGGGTCCATTTTCAGTGAAGGTAACAACATTATCCACAGCTAAAACTCTGTCAGCCAGAGATGTTATTCCAAGGAATTGGTCTCCAAAGGCAACTTATACTTCTCGCTTGAACTTCTCCTAA 810 51.23 MHLRPGYLWSVIMLVNFVGLGKFVLVDSTQLLPNRTTAASHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPILFKDGEGCGACYKVRCLDRAICARRAVTIIVTDECPGGYCANGRTHFDLSGAAFGRMAVAGAGSRLRDRGELTVAYRRTPCRYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIRQANSKEWMEMAHVWGATWCINGGPLKGPFSVKVTTLSTAKTLSARDVIPRNWSPKATYTSRLNFS* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2560711 2563421 + Chy1G003530.1 Chy01g00353 217534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00353 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 264 IPR007117 -
Chy01g00353 269 PANTHER EXPANSIN-B17 37 268 - -
Chy01g00353 269 Gene3D - 167 269 IPR036749 -
Chy01g00353 269 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576
Chy01g00353 269 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Chy01g00353 269 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Chy01g00353 269 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Chy01g00353 269 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Chy01g00353 269 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Chy01g00353 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 170 IPR007112 -
Chy01g00353 269 SUPERFAMILY PHL pollen allergen 170 264 IPR036749 -
Chy01g00353 269 Gene3D - 28 166 IPR036908 -
Chy01g00353 269 SMART dpbb_1 78 160 IPR007112 -
Chy01g00353 269 Pfam Expansin C-terminal domain 172 253 IPR007117 -
Chy01g00353 269 PANTHER EXPANSIN-B3 37 268 - -
Chy01g00353 269 Pfam Lytic transglycolase 80 147 IPR009009 -
Chy01g00353 269 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Chy01g00353 269 PRINTS Major pollen allergen Lol pI signature 174 189 IPR005795 GO:0005576|GO:0019953
Chy01g00353 269 PRINTS Major pollen allergen Lol pI signature 142 157 IPR005795 GO:0005576|GO:0019953
Chy01g00353 269 PRINTS Major pollen allergen Lol pI signature 240 257 IPR005795 GO:0005576|GO:0019953
Chy01g00353 269 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576|GO:0019953
Chy01g00353 269 PRINTS Major pollen allergen Lol pI signature 190 205 IPR005795 GO:0005576|GO:0019953
Chy01g00353 269 SUPERFAMILY Barwin-like endoglucanases 35 169 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g00353 Chy11g01152 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00353 Chy-Chr1:2560711 Chy03g01034 Chy-Chr3:13871209 1.94E-35 dispersed
Chy04g00051 Chy-Chr4:565264 Chy01g00353 Chy-Chr1:2560711 3.17E-28 dispersed
Chy02g01595 Chy-Chr2:14621358 Chy01g00353 Chy-Chr1:2560711 3.44E-25 transposed
Chy06g00035 Chy-Chr6:263379 Chy01g00353 Chy-Chr1:2560711 6.39E-70 transposed
Chy01g00353 Chy-Chr1:2560711 Chy11g01152 Chy-Chr11:17431592 2.72E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00353 K20628 - csv:101205324 545.043