Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00354 ATGGCGGAGGATAAGAAAACAGGGAAATTGAAGATGGTTATCGATGCAAAAACTCCAGAGAAGAAGATTGAGAAAGGGAATCACGTTGCAGCTGTTAGCTTGGAGAGGCAACAATGGAAGCCAGTTTTAGATGATGCTTTCTTGTCTAGAAGACCTCTCAAGAAAATCTGCAGTTCTGATTTTCATAACCCATTTCTTCATTCCCCTGTTTCTCTTTCTCCACCTTCTTCTAAAATCCAATTTCCTTTCGATTTCGAGGCATCTCAACATTCATCAATAACGACGACGACGACGACACAGTTTAATTCTCAACATCCGATTTCTTCCTCTTCTTCTTCTTCCTCTCCCTTTATGGCGTTCGGGTCTCCGGAGCAACAGATGATTTCTTTTAGTTCCAATCAACAACAGGGATTTGGCTTTCCGCCGTACTTCCTAAACGGAGACCCGGTGGCATCGCAGCAGAGACTTTTCAAGTACTGTAGCGATGCGTTTCATTTGAGTCCAAGAGGAAGAGCTATGATGATGAGTAGATTCGGCCCGGATGGAGGTAATTTGTTTCGGCCGACATTGCAGCCCATAAGTGCCACTAAGCTTTACAGAGGAGTTCGACAGCGGCATTGGGGGAAATGGGTGGCCGAAATTCGTCTCCCTCGTAACCGAACTCGTCTTTGGCTTGGAACTTTCGACACCGCTGAAGACGCTGCCATGGCTTACGATCGTGAAGCCTTCAAATTACGAGGCGAAAATGCTCGACTCAATTTCCCCGATCGTTTCTTCAAGAAAGACATTCCAAAAACAGAGGTGGAAACAGAGCATACAATTCCAATAACAGAAGAAGCTCATCCCGAAAACTTTATCGTTCTTCCGCCGCCAGAAGAAGAAAAACCAAATAACGACTTGACGGAGAGCGGCAGCTGCGCATCTGAGCCGACTGAGATGGTATGGGGAGAAATGGAAGAGGCTTGGTTTAATGCGATTCCGGCCGGTTGGGGTCCAGGAAGCGCTGTTTGGGATAATCTAGACCCAACAAACAATTTAGTTCTTCAATCACAAATCCCATTTGGTTCTTCAAACGAGCAACAGATGAACGAATCCAACGATAATCAGAACAAACTTGAAACTTCCGAATCGGCTTCGTCTTCGTCTACGTCTGCTCCAATGAAGCTTTTCTTATGGAAAGATCAAGATTGA 1191 45.34 MAEDKKTGKLKMVIDAKTPEKKIEKGNHVAAVSLERQQWKPVLDDAFLSRRPLKKICSSDFHNPFLHSPVSLSPPSSKIQFPFDFEASQHSSITTTTTTQFNSQHPISSSSSSSSPFMAFGSPEQQMISFSSNQQQGFGFPPYFLNGDPVASQQRLFKYCSDAFHLSPRGRAMMMSRFGPDGGNLFRPTLQPISATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPDRFFKKDIPKTEVETEHTIPITEEAHPENFIVLPPPEEEKPNNDLTESGSCASEPTEMVWGEMEEAWFNAIPAGWGPGSAVWDNLDPTNNLVLQSQIPFGSSNEQQMNESNDNQNKLETSESASSSSTSAPMKLFLWKDQD* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2568075 2569265 - Chy1G003540.1 Chy01g00354 217535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00354 396 Gene3D AP2/ERF domain 198 256 IPR036955 GO:0003700|GO:0006355
Chy01g00354 396 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 10 282 - -
Chy01g00354 396 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 294 393 - -
Chy01g00354 396 Pfam AP2 domain 199 247 IPR001471 GO:0003700|GO:0006355
Chy01g00354 396 MobiDBLite consensus disorder prediction 354 388 - -
Chy01g00354 396 ProSiteProfiles AP2/ERF domain profile. 198 255 IPR001471 GO:0003700|GO:0006355
Chy01g00354 396 SUPERFAMILY DNA-binding domain 198 257 IPR016177 GO:0003677
Chy01g00354 396 CDD AP2 197 256 IPR001471 GO:0003700|GO:0006355
Chy01g00354 396 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 10 282 - -
Chy01g00354 396 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 294 393 - -
Chy01g00354 396 MobiDBLite consensus disorder prediction 96 116 - -
Chy01g00354 396 PRINTS Ethylene responsive element binding protein signature 221 237 IPR001471 GO:0003700|GO:0006355
Chy01g00354 396 PRINTS Ethylene responsive element binding protein signature 199 210 IPR001471 GO:0003700|GO:0006355
Chy01g00354 396 SMART rav1_2 198 261 IPR001471 GO:0003700|GO:0006355
Chy01g00354 396 MobiDBLite consensus disorder prediction 354 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00354 Chy-Chr1:2568075 Chy02g01009 Chy-Chr2:6807260 4.06E-23 dispersed
Chy05g00558 Chy-Chr5:6109318 Chy01g00354 Chy-Chr1:2568075 1.34E-28 transposed
Chy02g00711 Chy-Chr2:4301477 Chy01g00354 Chy-Chr1:2568075 4.04E-31 transposed
Chy03g01019 Chy-Chr3:13772124 Chy01g00354 Chy-Chr1:2568075 1.07E-32 transposed
Chy07g00697 Chy-Chr7:6747463 Chy01g00354 Chy-Chr1:2568075 3.89E-33 transposed
Chy01g00354 Chy-Chr1:2568075 Chy11g01156 Chy-Chr11:17463009 9.65E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17257 PF00847 AP2 2.50E-13 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00354 - - csv:101205560 747.273