Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00369 ATGGGTTGGAAGAGATCTTCGAGGAATGGCAATTTGAGGATTTGGGTGCAGGTTTTAGTTGGATTCGTGGTCTGTGCAGCCCAAGTTCTTTTGGGAATTACGAATCCAGGGGATTTTTCTGCTATTAGTAGCTTACATACTGCACTTGGACTCCCCAGTCTTCCTGGATGGGGCATCGGGCAAGACCCATGCGGAGACGCATGGCAGGGTGTTGTTTGTAACGATTCAAGTATCATTAGAATAATCATTAATGCTGCTAATTTGGGAGGTGAACTTGGTGACAACTTGGGATTGTTTTCTTCAATCCAAACAATTGATTTAAGCAACAATCATATAGGGGGAAGTATACCATCCAATTTACCCGTTACCCTGCAGAATTTTTTTCTTTCAGCTAATCAGTTCACAGGAAGCATTCCGAGTTCATTATCATCTTTGACTCAACTGACAGCAATGTCGTTCAATGATAACAAATTAAGCGGAGAAATACCTGATTCCTTTCAAGCCATTTCTCAATTGGTCAATTTTGACTTATCCAATAACAACTTGAGCGGGCCACTGCCTCCATCTGTAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAACAATCAGCTGTCAGGAACCCTTGATGTTCTACAAGATCTTCCACTGAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGGTGCTGAGTATCCCTAATTTCAGAAAGGATGGAAACCCATTTAATTCTTCTGTCTCTCCGACATCTCCTACTGTATCTCCTTCTCCACCATCAAAGTCAGCACCAGCCCCGCCCGTTTCTGGAGGACCACCAGTTTCTGGAGCACCTCCGTCTTCTCAACAAAGACCTAAGAAACAGGCTGATGGACCATCGGCATCTGAGGAATCCAGTTCTGGAAAAAATAAGAAAAGCACTAAAAGGGTTGTTTTAATAACAATTGCAGTGGTTTTGTCTTTCATAATTTTGGTCTTGGCATGCGTGCTCTTTATGCCAAGGTGCAGAAGAAGAAGAAGAAGTGATAGTGTTTCAAAGCGACATCAGATAGGTGCTTATAGGGGTGAGAGAGAGAACGTTGGAAATCAGGGAGCCATGCCCCAAACAAATGATCAGATACCTAAAGTAGTTCCAAAAGAGCCAGTTGTAAGGATGAAGCAGGAGACTCAAACAGAGGTGCAGAAGGTTCCAAAAGATAATGTCGAGAGAGAGAAAAACATGCCAAGAATGAGCGCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCGCACTCGATGTCTATCTAATGCCTCCTCCTCCCCCTCCCCCACCCCCACCACCTCCTCCTCCCCCTCCCCCTCCTGTTGAAGGGGTCACTGCCGTGCCCACTGTTCCAGCCGAAGTTCCTCCCTTGAAGCCTCTCACTAAAAATAAAATTACCTTACCTTTTGCGAGACCTTATACCATTGCGTCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTCTAGGAGAAGGAATGCTGGGAAATGTTTATAGGGCACACCTCCCCAGTGGGAAAGTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCTGCAAAAGGATGATGAGTTTCTCGAGCTAGTCAATAATATTGATAGAATCCGACATGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTTTGAGTATTGCAGTGGTGGAACATTGCAGGATGCACTGCACTCAGACGAAGAGTTCAGGAAGAAGCTTTCATGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATTTGCATGAGGTCTGTCAGCCACCTGTTATTCATAGGAACTTCAAGTCTGCGAATGTCCTACTGGATGATGATCTTTCAGTGCGTGTTTCAGATTGTGGGCTGGCTCCACTAATATCAAAAGGAGCTGTTAGTCAGCTCTCTGGTCAGCTTCTAACTGCATATGGTTATGGAGCGCCAGAATTTGAATCAGGTGTTTATACACTTGAGAGTGATGTTTACAGCTTTGGTGTGGTTATGCTGGAACTTCTAACTGGCCGGATGTCTTACGACAGAACAAGGATCCGAGGTGAGCAGTTTCTAGTTAGATGGGCAATTCCACAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCACTCAATGGTCGATACCCTGCCAAATCCTTATCATACTTTGCCGATATCATATCAAAATGTGTTCAGTCCGAGCCTGAATTCCGGCCACCAATGTCATCGGTTGTTCAAGACTTGCTCAACATGATAAGGAGAGAACCACAAGGCAGTGGTTCAAGTGAGGACTGA 2373 44.67 MGWKRSSRNGNLRIWVQVLVGFVVCAAQVLLGITNPGDFSAISSLHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIRIIINAANLGGELGDNLGLFSSIQTIDLSNNHIGGSIPSNLPVTLQNFFLSANQFTGSIPSSLSSLTQLTAMSFNDNKLSGEIPDSFQAISQLVNFDLSNNNLSGPLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKVLSIPNFRKDGNPFNSSVSPTSPTVSPSPPSKSAPAPPVSGGPPVSGAPPSSQQRPKKQADGPSASEESSSGKNKKSTKRVVLITIAVVLSFIILVLACVLFMPRCRRRRRSDSVSKRHQIGAYRGERENVGNQGAMPQTNDQIPKVVPKEPVVRMKQETQTEVQKVPKDNVEREKNMPRMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPPPPVEGVTAVPTVPAEVPPLKPLTKNKITLPFARPYTIASLQQYTNSFSQENLLGEGMLGNVYRAHLPSGKVLAVKKLDKRAFSLQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIFEYCSGGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRIRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFADIISKCVQSEPEFRPPMSSVVQDLLNMIRREPQGSGSSED* 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2634308 2641209 + Chy1G003690.1 Chy01g00369 217550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00369 790 MobiDBLite consensus disorder prediction 281 306 - -
Chy01g00369 790 ProSiteProfiles Protein kinase domain profile. 500 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00369 790 Pfam Protein tyrosine and serine/threonine kinase 503 774 IPR001245 GO:0004672|GO:0006468
Chy01g00369 790 PANTHER OS01G0253100 PROTEIN 23 789 IPR045271 GO:0004714|GO:0006468
Chy01g00369 790 Gene3D Phosphorylase Kinase; domain 1 473 577 - -
Chy01g00369 790 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 23 789 - -
Chy01g00369 790 SUPERFAMILY L domain-like 54 241 - -
Chy01g00369 790 SUPERFAMILY Protein kinase-like (PK-like) 477 774 IPR011009 -
Chy01g00369 790 Gene3D Ribonuclease Inhibitor 39 257 IPR032675 -
Chy01g00369 790 MobiDBLite consensus disorder prediction 248 312 - -
Chy01g00369 790 MobiDBLite consensus disorder prediction 436 459 - -
Chy01g00369 790 Gene3D Transferase(Phosphotransferase) domain 1 579 783 - -
Chy01g00369 790 MobiDBLite consensus disorder prediction 258 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00369 - - - csv:101213734 1389.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00369 Chy-Chr1:2634308 Chy03g00317 Chy-Chr3:3599734 1.37E-155 dispersed
Chy01g00369 Chy-Chr1:2634308 Chy02g00324 Chy-Chr2:2101640 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g488 . Blo15g00549 . Bda13g00653 . . . . Cmo11g01937 Cmo19g01004 . . . . . Cpe15g00790 Cpe04g00762 Bhi05g01832 . . . . . . . . . . . . . . . . Cone12ag1436 . Csa07g00420 . . . . . . Bpe14g00667 . Bma02g01363 Bma12g00749 . . . Cma11g01861 Cma19g00972 Car11g01549 Car19g00763 . . . . . . . . . . . . . . . . Lsi11g01525 . Chy01g00369 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g00369 . 31 788 Strubbelig Receptor Gene Family AT4G03390 62.9 2.2e-210 729.2
Chy02g00324 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.2 8.2e-157 551.2
Chy04g01764 . 9 741 Strubbelig Receptor Gene Family AT5G06820 53.1 1.2e-181 633.6
Chy03g00317 . 22 697 Strubbelig Receptor Gene Family AT1G78980 61.5 1.4e-195 679.9
Chy04g00715 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Chy01g02121 . 24 692 Strubbelig Receptor Gene Family AT1G78980 50.5 9.8e-125 444.5
Chy03g00317 . 20 674 Strubbelig Receptor Gene Family AT3G13065 52.2 4.1e-144 508.8
Chy12g00528 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.3e-84 311.2
Chy04g01764 . 9 741 Strubbelig Receptor Gene Family AT5G06820 53.1 1.2e-181 633.6
Chy01g00369 . 31 788 Strubbelig Receptor Gene Family AT4G03390 62.9 2.2e-210 729.2
Chy02g00324 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.2 8.2e-157 551.2
Chy03g00317 . 20 674 Strubbelig Receptor Gene Family AT3G13065 52.2 4.1e-144 508.8
Chy03g00317 . 22 697 Strubbelig Receptor Gene Family AT1G78980 61.5 1.4e-195 679.9
Chy04g00715 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Chy01g02121 . 24 692 Strubbelig Receptor Gene Family AT1G78980 50.5 9.8e-125 444.5
Chy04g00715 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.8 8.0e-215 743.8
Chy01g02121 . 8 714 Strubbelig Receptor Gene Family AT1G53730 60.1 3.3e-184 642.1
Chy12g00528 . 5 689 Strubbelig Receptor Gene Family AT1G53730 51.6 1.4e-158 557.0
Chy03g00317 . 15 682 Strubbelig Receptor Gene Family AT1G53730 51.8 1.2e-157 553.9
Chy04g00715 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 7.2e-189 657.5
Chy01g02121 . 6 704 Strubbelig Receptor Gene Family AT3G14350 55.1 4.9e-169 591.7
Chy12g00528 . 138 712 Strubbelig Receptor Gene Family AT4G22130 60.3 1.1e-179 626.7
Chy04g00715 . 398 726 Strubbelig Receptor Gene Family AT4G22130 63.4 5.3e-121 431.8
Chy01g02121 . 391 706 Strubbelig Receptor Gene Family AT4G22130 64.2 5.1e-116 415.2
Chy01g00369 . 456 780 Strubbelig Receptor Gene Family AT4G22130 57.7 4.3e-107 385.6
Chy03g00317 . 386 696 Strubbelig Receptor Gene Family AT4G22130 56.9 2.2e-98 356.7
Chy02g00324 . 464 752 Strubbelig Receptor Gene Family AT4G22130 60.1 2.8e-98 356.3
Chy04g01764 . 393 715 Strubbelig Receptor Gene Family AT4G22130 50.5 2.9e-87 319.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70970 PF07714 PK_Tyr_Ser-Thr 5.50E-42 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00369 Chy_Chr01 FPKM 13.306779 15.252751 44.846764 47.091549 3.971952 3.588702 4.836311 101.555336 104.745537 108.656937