Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00375 ATGACAATTTTCTCCTTCTTCACTAGAGCTTCCAGAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTACTCATCAGCACCCTCAGTGGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGGCGGTTCTGTTGAGGAATCACCAAAAAAGAGAGTTCTGGTGCTTGGAACAGGATGGGCCGGCACCAGTTTTCTCAAGGATCTGGATGCTTCAAAATATGACGTTCAGGTTGTTTCGCCTCAAAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTTACATGTGGATCAGTTGAAGCACGAAGCATTGTTGAACCGGTTCGGAACATCGTGAAGAAGAGAAAAGGTGAAATTAAGTTCTGGGAAGCTGAATGCCTTAAGATCGATGCTGCGAACAAGAAGGTTTTCTGCCAGTCTAATGTTGACAATAATTTGGTTGGCAATAGGGAGTTTGCCTTAGAATATGACTATTTAGTAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACCCCTGGTGTCAAGGAAAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCTGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAAAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGAGTTGAATTTGCTGCAGAGCTTCATGACTTTTTTGAAGAAGATTTGGTTAACTTATATCCTTCGGTTAAAGATCTAGTGAAAATTTCAGTAATTCAATCTGGAGATCACATTTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCTGAACAAAAATTCCTAAGAGATGGCATCGATGTACACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTGAGATGAAGGTAAAATCAACTGGAGAATCCTGTTCGATGCCGCATGGACTAATTATCTGGTCTACGGGTATCATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTCGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATTGCCACCATATTTAAAGCTGCAGACAAAGATAACTCTGGTACACTGACAGTTACAGAATTTCAAGATGTTCTAGATGATATTCTCATAAGGTATCCTCAAGTAGAAATATTTTTGAGGAGCAAACATCTCCGCGATGTAAAAGATCTATTAAGGGATTCTCAGGGACATGAGAATGAAATAGATATTGAAGGATTTAAGTCAGCTCTTTCTATTGCCGACACGCAGATGAAAAGTCTGCCTGCTACCGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTCCAGGTGCTTCAACCGCAGAGAGCATTGCACTGAGAATCCTGAAGGTCCTCGACGTTTTAAGAGTTCTGGACGTCATCAATTTCTTCCCTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGAGGAGAACAAGCTGCTGCCGAACTCCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTCTGGTATTCTGTATATGCAAGCAAGCAAGTCAGCTGGCGCACAAGATATCTAGTGGTATCAGATTGGACAAGAAAGTTCATATTTGGAAGAGATTCGAGCCGCATCTGA 1725 42.38 MTIFSFFTRASRAFHGSPAYSKLLLISTLSGGGLLAYADSQSDVGGSVEESPKKRVLVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEIKFWEAECLKIDAANKKVFCQSNVDNNLVGNREFALEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRKNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFLRDGIDVHTGCRVVSVSDKEIEMKVKSTGESCSMPHGLIIWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIATIFKAADKDNSGTLTVTEFQDVLDDILIRYPQVEIFLRSKHLRDVKDLLRDSQGHENEIDIEGFKSALSIADTQMKSLPATAQVAAQQGAYLSRCFNRREHCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI* 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2672962 2677839 + Chy1G003750.1 Chy01g00375 217556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00375 574 SUPERFAMILY FAD/NAD(P)-binding domain 218 373 IPR036188 -
Chy01g00375 574 Pfam Pyridine nucleotide-disulphide oxidoreductase 54 378 IPR023753 GO:0016491
Chy01g00375 574 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Chy01g00375 574 PANTHER NADH DEHYDROGENASE 44 574 IPR045024 GO:0003954|GO:0006116
Chy01g00375 574 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Chy01g00375 574 SUPERFAMILY EF-hand 329 453 IPR011992 -
Chy01g00375 574 Gene3D - 47 397 - -
Chy01g00375 574 Gene3D - 422 573 - -
Chy01g00375 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Chy01g00375 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Chy01g00375 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Chy01g00375 574 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Chy01g00375 574 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL 44 574 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00375 Chy-Chr1:2672962 Chy11g01079 Chy-Chr11:15466106 0 dispersed
Chy12g00654 Chy-Chr12:9405560 Chy01g00375 Chy-Chr1:2672962 7.99E-06 transposed
Chy01g00375 Chy-Chr1:2672962 Chy12g00977 Chy-Chr12:15050953 0 wgd
Chy01g00375 Chy-Chr1:2672962 Chy02g00331 Chy-Chr2:2144396 1.19E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00375 K03885 - csv:101203130 1136.71