Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00419 ATGCCAGCCGGAATGATGATTCCAGCGAGAAACACAGCGTCGTCCATGATCGGAAGAAATGGAAATGTTGGAATTTTTGGGTCCCCAGCCAGCCTTGTTCTTGGTCAGGAGCTGCAAGGAATAGAAATGGGAGAAAATGAATATGGAAGAATGAGAGAAACAGAAGAGTTTGAAAGTGGAACGAAATCAAGTAGTGAGAATCATGAGGTTGGTTCCGGTGATGACCAACTCAATAACCAACGCCCCAACAAGAAAAAGCGTTACCACCGCCACACTCAGCATCAGATCCAACAAATGGAAGCGTTTTTCAAGGAATGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTAAGTAGGGAGTTGAATTTAGAGCCATTGCAAGTCAAGTTTTGGTTCCAAAACAAGAGAACTCAGATGAAGACACATCATGAGCGACATGAAAACACACAGCTCCGAACAGAAAATGAGAAGCTAAGAGCAGATAATATGAGATATAGAGAAGCTCTAAGTAATGCCACGTGCCCCAATTGTGGAGGTCCTACCGCCATTGGAGAGATGTCCTTTGATGAACATCATCTTAGGCTTGAAAATGCCCGCTTGAGAGAAGAGATCGATCGAATTTCAGCCATAGCAGCAAAATACGTTGGAAAGCCAGTATCAAACTACCCTCTTCTTTCCACAACAATCCCTTCACGTCCTCTAGAACTTGGAATGGGAAGCTATGGAGGCCACGATTTGGGCCTTGGACCGGGAGGCGGGGACATGTTCGGGGCAGCGGACCTTCTAAGGACCATAAGTGCACCATCAGAGGCGGACAAGCCGGTAATCATCGAGCTAGCGGTTGCAGCAATGGAGGAGCTGGTCAGAATGGCTCAGATGGGTGAGCCACTGTGGATGACAGGGGTTGATGGGTCAACGAATGAGCTTAATGAAGAGGAATATGTTAGAAGCTTTCCAAGAGGAATTGGTCCTAAGCCATCTGGGTTTAGCTGTGAAGCTTCTCGTGCTACTACTGTTGTCATTATGAATCATATTAGCCTTGTTGAGATGCTCATGGATGTGAATCAATGGTCAACAACATTCACAGGGATTGTGTCAAGAGCTATGACATTAGAAGTATTATCAACCGGCGTTGCTGGAAACTACAACGGAGCATTACAAGTGATGACATCCGAATTGCAAGTGCCTTCTCCACTAGTTCCAACTCGGGAGAGCTATTTCGTGAGGTATTGTAAACAACATGGTGAGGGAACATGGGCTGTTGTCGACGTTTCCTTAGACAATTTACGGCCAGCTCCTGCTCTTAGATGTAGAAGAAGGCCATCCGGCTGCTTAATCCAAGAAATGCCCAATGGTTATTCTAAGGTTACATGGGTTGAGCATGTTGAGGTGGATGATCGTGGTATCCACAGTTTATACAACCAGCTAGTTAGCTCTGGCCACGCGTTCGGCGCAAAGCGTTGGATTGCCACGTTGGATCGTCAGTGTGAACGACTCGCCAGCGCCATGGCCACCAGTATTATTCCTAATGGTGATGCTGGAGTGATAACAAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTGGCAGAGAGAATGGTGATGAGCTTTTGCGGTGGAGTGAGCGCGTCGACAACACACACTTGGACAACTCTGTCGGGAACCGGAGCTGACGACGTTCGAGTTATGACGAGAAAGAGCGTTGACGATCCCGGCAGACCATCCGGCATTGTCCTCAGCGCAGCCACTTCCTTTTGGCTGCCTCTTCCTCCCAACAGAGTCTTCCATTTTCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCAAACGGTGGAGTTGTTCAAGAAATGGCTCACATTGCCAATGGCCGTGACACAGGCAATTGTGTTTCCTTACTACGAGTTAACAGTGCAAATTCAAGCCAAAGTAACATGTTAATATTACAAGAAAGCAGCACAGATCAAACAGCCTCATTCGTGATATACGCGCCGGTGGACATTGTGTCAATCAACGTGGTGCTAAACGGGGGAGATCCCGATTATGTGGCTCTTCTACCATCTGGATTTGCCATTCTTCCCGACGGAAGCACGGTGTCAAGCGGGGGGGCCAATGCCGTGGGGGAACATGGGTCCGGTGGGTCGCTTTTAACGGTGGCGTTTCAGATATTGGTTGACTCGGTTCCCACAGCAAAATTATCTCTTGGGTCAGTTGCGACGGTCAACAATCTCATTGCATGTACGGTTGAGAGAATTAAAGCCTCTTTGTCATGCGACAATCCTTAA 2286 47.38 MPAGMMIPARNTASSMIGRNGNVGIFGSPASLVLGQELQGIEMGENEYGRMRETEEFESGTKSSSENHEVGSGDDQLNNQRPNKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSNYPLLSTTIPSRPLELGMGSYGGHDLGLGPGGGDMFGAADLLRTISAPSEADKPVIIELAVAAMEELVRMAQMGEPLWMTGVDGSTNELNEEEYVRSFPRGIGPKPSGFSCEASRATTVVIMNHISLVEMLMDVNQWSTTFTGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGIHSLYNQLVSSGHAFGAKRWIATLDRQCERLASAMATSIIPNGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPSGIVLSAATSFWLPLPPNRVFHFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDQTASFVIYAPVDIVSINVVLNGGDPDYVALLPSGFAILPDGSTVSSGGANAVGEHGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCDNP* 762
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 2952449 2957457 - Chy1G004190.1 Chy01g00419 217600
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00419 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 47 758 IPR042160 -
Chy01g00419 761 SUPERFAMILY Homeodomain-like 68 141 IPR009057 -
Chy01g00419 761 Gene3D - 71 159 - -
Chy01g00419 761 SMART HOX_1 83 146 IPR001356 GO:0003677
Chy01g00419 761 SUPERFAMILY Bet v1-like 518 753 - -
Chy01g00419 761 Pfam START domain 279 498 IPR002913 GO:0008289
Chy01g00419 761 SUPERFAMILY Bet v1-like 271 500 - -
Chy01g00419 761 MobiDBLite consensus disorder prediction 64 78 - -
Chy01g00419 761 CDD homeodomain 85 143 IPR001356 GO:0003677
Chy01g00419 761 CDD START_ArGLABRA2_like 273 497 - -
Chy01g00419 761 MobiDBLite consensus disorder prediction 52 94 - -
Chy01g00419 761 Coils Coil 148 168 - -
Chy01g00419 761 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Chy01g00419 761 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Chy01g00419 761 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Chy01g00419 761 Gene3D - 310 495 IPR023393 -
Chy01g00419 761 ProSiteProfiles START domain profile. 269 501 IPR002913 GO:0008289
Chy01g00419 761 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 47 758 - -
Chy01g00419 761 SMART START_1 278 498 IPR002913 GO:0008289
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00419 Chy-Chr1:2952449 Chy11g02014 Chy-Chr11:25991815 0 dispersed
Chy04g01118 Chy-Chr4:17269937 Chy01g00419 Chy-Chr1:2952449 6.87E-20 dispersed
Chy01g00419 Chy-Chr1:2952449 Chy11g00599 Chy-Chr11:6948159 0 wgd
Chy01g00419 Chy-Chr1:2952449 Chy12g01045 Chy-Chr12:15645774 0 wgd
Chy01g00419 Chy-Chr1:2952449 Chy02g00386 Chy-Chr2:2460284 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17268 PF01852 START 9.50E-60 CL0209 Chy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00419 K09338 - csv:101219415 1467.6