Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00422 ATGGTTAATTTTGTTCCTCTCTCTCTGCTCTTTGTGTTTCATGCTTTCATATGCCTCTTTCACTTCACTCCTCCGATCTACTGCCAAATTCCTTCTATCATAAACATCGCTGCCGTTTTTACTTTCGATTCCGTCATCGGAAGAGCTGCTAAGCCGGCCATGGAAGCTGCAATCTCCGATATAAACGCCGACCCCAATATCTTGAATGCCACAAAGCTTAACTTTTTCATGGAAGACTCTAATTGCAGTGGCTTCTTGGGCTCCGTTCAAGCTTTGCAGGTACTTGAGAAAGAGATTGTGGCCATGATTGGCCCACAATCCTCAGTAGTGGCTCATTTGATTTCTCAGATTGTTAATGGTCTACAAATTCCTCTAGTATCTTATGCTGCCACTGATCCTACATTATCCACTTTGCAACTCCCTTTTTTCCTCAGAACCACTATAAGCGACTCTTACCAAATGGCTGCCATGGCTGACTTGATTGATTACTATGGCTGGAAAGAAGTCATTGTTATATTTTTGGATGATGATTATGGTAGAAATGGGATATCTTTTCTGGGTGATGAACTTCAGAAGAAAATGTGCCGTATTTCCCATGCGTTCCCTTTACCTTCTCTGGATAATCTTACTAAGATCACACAAATACTCAACAATTCTAAATTACTTGGTCCTCGAGTTTATGTAGTTCATGTAGGCACTGATCCCCAATTAAGAATCTTCACTATTGCCCATAAACTCGGTATGCTTTCAAGCAATTATGTTTGGTTCGCAACTGATTGGCTTTCCACAACTCTTGATTCTTCTTCACCAATAACCAATGGTGCTTCACTTGATATGCTTAATGGGGTTGTTGGGTTGCGCCCTCATACTCCAGAGTCTAAAGGAAAGAGAGATTTGTGGGATCGGTTAAGCAAAATGCAGCCAAAAGGTTTAACTAATTCTGCGTTGAATGTTTATGGACTTTATGCTTATGATTCAGTATGGGTTGTTGCAAAGGCAGTGGATAAGTTTCTTAAAGAAAATGGGAATATCATTACATTTTCACCCACAGGTAAAGTGTTGGGCTCTAATGAAAGTGGAATTCAATTGGGTAATGTTAAAGTGTTTGATAGAGGGAGTGATTTACTTAAAATTCTTATGCAAACTGATTACAATGGTTTAAGTGGGAGAATTCAGTTTGGTGAAGACAGAAGTGTTGTTAATGGTAGCTTCGATGTGATTAATATTAACCAAAGGGAAATGAATTTGGTGGGTCATTGGTCTAATGACTTAAGATTTCATCCTAACTTCGATCAGAAACTTAAGAAAGTGGTTTGGCCTGGTGGGAAGGAGGAGATACCAAGGGGATGGGTGATAGCAGATAGTGGAAAACCTTTGAGAATTGCTTTCCCAAGAAGAGCAAGCTTTGTTGATTTTGTAACTCAATTGAACAACACCAATATTGTTCGAGGATATGTTATTGATATTTTCAAAGAAGCTCTCAAGTTTGTTCCATATGAAGTTCCTTACAAGTTTGTGCCTTTTGGAGATGGTAAAGTTAATCCCAGTTATGATGAACTTGTTCATTCGGTTGCAAATAATGTGTTTGATGCAGCAGTTGGGGACATTGCAATCGTTACGAACCGAACCAAAGTTGTTGATTTTTCTCAACCATATACCACAACAGGGCTGATCATAGTTGCACCAGTTGAAGATTCAAAATCAAGTGCTTGGGTGTTCCTTCAACCATTTACAGTAGAGATGTGGTGTGCAACTGCAGGTTCCTTTGTGGTAATTGGTATTGTTATTTGGATGTTAGAGCATAGAATCAACGACCATTTTCGAGGTCCTCCAAAAAGACAAATTATCACAATGTGTTTGTTTAGCATTTCAACTCTTTTCAAGGCAAATCAAGAAGCAACAATAAGCCCACTCTCACGACTAGTGATGTTGGTGTGGCTGTTCTTATTATTGGTAATAACCTCAAGCTACACAGCAAGTTTGACATCAATCCTTACACTCCAACAACTTTGGTCTCCAATACGAGGAATTGATGACTTGGTTGCAAGTAATTTGCCAATTGGATATCAAGTAGGATCCTTTGCTTACGACTATCTCACACAAAGCCTTTTCATTCCAAGTTCAAGACTGCAGAGGCTGAACTCCTCTGAAGACTACGAGAAAGCACTGCACCTTGGCCCAAAAGGAGGCGGCGTGGCGGCCATCATCGATGAACTTCCGTACTTGGAGTTGATTCTGTCAAAGACTAAAGAATTTGGAATCATTGGTCAACCTTTTACCAGGAGCGGATGGGGATTTGCTTTTCAACGAGGATCTCGACTTGCAGTCGATATGTCAACTGCAATTCTGAAGCTCTCGGAGAGCGGAAAGCTTCAAGAAATACATGACTTGTGGTTCTGCAAGCTAGGGTGTCCAGGTAATCGGGAAGGAAAGTCGGAGCCAGACCAACTTCACTTGATCAGTTTCTGGGGTTTGTATTTGCTTTGTGGAATCATTTCCCTCGCTGCACTCTTCCTGTTTCTTTTAAGACTAATCCGCCAGTATATCCGTTACCTACGACACCATCGACGACGTCATTCAGAAGAAGTTACACCATTCCCAGTTCCATCCAATACTAGCTGTACTCAGACGATTCAAAACTTTATAGACTTTATTGATGAGAAAGAAGAAGCTATCAAAAGCTTCTTTGGATCATCACATGGTGCTCAAAATGGGAACCAACTTCACAATCATTCCGAAAAAGCCAAGGAGAAGGCTGATTCAGAGATACAGATAGGGCCCACGACCATGGGTATGAATCGAGGATAG 2808 40.78 MVNFVPLSLLFVFHAFICLFHFTPPIYCQIPSIINIAAVFTFDSVIGRAAKPAMEAAISDINADPNILNATKLNFFMEDSNCSGFLGSVQALQVLEKEIVAMIGPQSSVVAHLISQIVNGLQIPLVSYAATDPTLSTLQLPFFLRTTISDSYQMAAMADLIDYYGWKEVIVIFLDDDYGRNGISFLGDELQKKMCRISHAFPLPSLDNLTKITQILNNSKLLGPRVYVVHVGTDPQLRIFTIAHKLGMLSSNYVWFATDWLSTTLDSSSPITNGASLDMLNGVVGLRPHTPESKGKRDLWDRLSKMQPKGLTNSALNVYGLYAYDSVWVVAKAVDKFLKENGNIITFSPTGKVLGSNESGIQLGNVKVFDRGSDLLKILMQTDYNGLSGRIQFGEDRSVVNGSFDVININQREMNLVGHWSNDLRFHPNFDQKLKKVVWPGGKEEIPRGWVIADSGKPLRIAFPRRASFVDFVTQLNNTNIVRGYVIDIFKEALKFVPYEVPYKFVPFGDGKVNPSYDELVHSVANNVFDAAVGDIAIVTNRTKVVDFSQPYTTTGLIIVAPVEDSKSSAWVFLQPFTVEMWCATAGSFVVIGIVIWMLEHRINDHFRGPPKRQIITMCLFSISTLFKANQEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTLQQLWSPIRGIDDLVASNLPIGYQVGSFAYDYLTQSLFIPSSRLQRLNSSEDYEKALHLGPKGGGVAAIIDELPYLELILSKTKEFGIIGQPFTRSGWGFAFQRGSRLAVDMSTAILKLSESGKLQEIHDLWFCKLGCPGNREGKSEPDQLHLISFWGLYLLCGIISLAALFLFLLRLIRQYIRYLRHHRRRHSEEVTPFPVPSNTSCTQTIQNFIDFIDEKEEAIKSFFGSSHGAQNGNQLHNHSEKAKEKADSEIQIGPTTMGMNRG* 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2975575 2981020 - Chy1G004220.1 Chy01g00422 217603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00422 935 Gene3D - 149 422 - -
Chy01g00422 935 Gene3D - 452 569 - -
Chy01g00422 935 SUPERFAMILY Periplasmic binding protein-like I 28 451 IPR028082 -
Chy01g00422 935 Pfam Receptor family ligand binding region 51 410 IPR001828 -
Chy01g00422 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 19 904 - -
Chy01g00422 935 PANTHER GLUTAMATE RECEPTOR 3.7 19 904 - -
Chy01g00422 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 238 261 - -
Chy01g00422 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 107 135 - -
Chy01g00422 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 47 63 - -
Chy01g00422 935 Pfam Ligand-gated ion channel 800 831 IPR001320 GO:0015276|GO:0016020
Chy01g00422 935 Gene3D - 570 702 - -
Chy01g00422 935 SMART GluR_14 460 801 IPR001320 GO:0015276|GO:0016020
Chy01g00422 935 MobiDBLite consensus disorder prediction 900 935 - -
Chy01g00422 935 CDD GluR_Plant 457 799 - -
Chy01g00422 935 PIRSF IGluLR_plant 1 929 IPR017103 -
Chy01g00422 935 Gene3D - 53 401 - -
Chy01g00422 935 CDD PBP1_GABAb_receptor_plant 35 426 IPR044440 -
Chy01g00422 935 Pfam Bacterial extracellular solute-binding proteins, family 3 478 799 IPR001638 -
Chy01g00422 935 SUPERFAMILY Periplasmic binding protein-like II 445 799 - -
Chy01g00422 935 Gene3D - 746 806 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00422 Chy-Chr1:2975575 Chy11g00606 Chy-Chr11:7129683 0 dispersed
Chy01g00422 Chy-Chr1:2975575 Chy11g00602 Chy-Chr11:6997659 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00422 K05387 - csv:101203158 1769.98