Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00438 ATGGCCTGGACCCGACGATCCCCCGTCGGCAATGGCTCCTCCGCCACCGTCTACCTCGCCTCCACTGCCTCCTCCGGCCAACTATTTGCTGTCAAGTCCGCCGAGCTTCTCAAATCAGACTTCTTGAAAATAGAGCAAAGGGTTCTTTCTTCCCTGTCCAACCCTTCAATTGTCGGCTACAGGGGATTCGATGTAACCACAGAAAATGGGAAGCTAATGTACAATCTCTTCATGGAGTACGCTGCCGGTGGTACTCTCACTGATGAGATATTCCGGCGTGGTGGCCGGATTAAGGAGCCAACGGCGGCGTTTTACACGCGTGAAATTGTTAGAGGATTGGAGTACTTGCACAAACAGGGGTTGGTGCATTGTGATATCAAAGCTAAGAACATTTTAATTGCTGGAGATGGTTTGAAGATTGCTGATTTTGGATGCTCCAGATGGGTTTGTGAGGCCGAGGCAGTAATAGGCGGAACGCCGATGTTCATGGCACCGGAGGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGACATATGGGCACTTGGGTGTACATTAATCGAAATGGTCACCGGCGCTCCACCATGGAAAATTACCGACGACCCAGTTTCGGTGTTGTACCGGATCGGATATTCTGGCGAGTCTCCGGAAATTCCGAGCTTTCTGTCGGAGAAAGGAAAGGATTTTTTAAGGAAATGCTTGAGAAGGGAAGCAACAGAAAGATGGAGTGCGAGTCAACTTCTTGAACATCCATTTTTGGGGGAATTGAGTTCTGGGTTGGAGGAAATCAAGGAATTACATTTATATTCTCAATCTCCGACGAGTATTTTAGATCAAAGCCTCTGGAATTCCTTAGAAGAAGAATCAGAAACTTTGTTGAGAACAGAGCAATGGGAGGATGACAGAATCGAACGGCTGGCTACGTTTTCAGGAGAAATTAAGTGGGAATTGGGAGACGAGAATTGGATCACAATCAGAAGCTATGTAGATGGTGAAGATGAAGATGAATTAAGTTTTAGTAGAAATGATTTAGACTTAGTGGAAGAGGGAAGAATAGTTAGTGAGAAAATCCAGTATTTGGAATTGTTAGATAAAACAGTTAGCTTTAGAGTAAGGTAG 1119 46.02 MAWTRRSPVGNGSSATVYLASTASSGQLFAVKSAELLKSDFLKIEQRVLSSLSNPSIVGYRGFDVTTENGKLMYNLFMEYAAGGTLTDEIFRRGGRIKEPTAAFYTREIVRGLEYLHKQGLVHCDIKAKNILIAGDGLKIADFGCSRWVCEAEAVIGGTPMFMAPEVARGEKQGISSDIWALGCTLIEMVTGAPPWKITDDPVSVLYRIGYSGESPEIPSFLSEKGKDFLRKCLRREATERWSASQLLEHPFLGELSSGLEEIKELHLYSQSPTSILDQSLWNSLEEESETLLRTEQWEDDRIERLATFSGEIKWELGDENWITIRSYVDGEDEDELSFSRNDLDLVEEGRIVSEKIQYLELLDKTVSFRVR* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3150118 3151236 - Chy1G004380.1 Chy01g00438 217619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00438 372 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00438 372 SUPERFAMILY Protein kinase-like (PK-like) 5 297 IPR011009 -
Chy01g00438 372 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Chy01g00438 372 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 336 - -
Chy01g00438 372 CDD STKc_MAPKKK 3 253 - -
Chy01g00438 372 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 336 - -
Chy01g00438 372 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00438 372 Gene3D Transferase(Phosphotransferase) domain 1 2 313 - -
Chy01g00438 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Chy01g00438 372 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g00438 Chy11g00625 CCT
Chy01g00438 Chy11g00625 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00438 Chy-Chr1:3150118 Chy02g00907 Chy-Chr2:5896049 3.77E-72 dispersed
Chy01g00968 Chy-Chr1:9775777 Chy01g00438 Chy-Chr1:3150118 1.20E-105 transposed
Chy01g00438 Chy-Chr1:3150118 Chy11g00625 Chy-Chr11:7372794 8.37E-123 wgd
Chy01g00438 Chy-Chr1:3150118 Chy02g00415 Chy-Chr2:2599132 6.02E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70972 PF00069 Pkinase 1.70E-53 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00438 K20716 - csv:101205351 714.146