Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00439 ATGAACTTCTTCCCCTCCGATGATAAATCCCGAGTTCTCTCTGCTTCTCACTCCAATCTTACTCCCACCAAACTCCCCTTCAATGTTAATACCGGGTTGAATCTCCTGACGACCAACTCGTGTAGCGATCAATCCATGGTGGATGATGGAGTTTCACCAAACCCAGAAGAAAAAAGAGTAAAAAACGAGAGAGCAGTCCTTCAAGCTGAATTGGAGAGGATAAATTCAGAGAATCTAAGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACTCTACAGATGCAATTCAATACACTAATACAAACCCAGAAAACAGAAGACGTCGGTGACCCGATTGAGGAAAACGCCGACGGCAGTGGTGGCGGAGGGAATAACAATAACAACAACAACAATACAAATATTAGTAATAAACTGGTGCCAAGACAATTTATGGATCTTGGATTAGCTACCAATACGGAGAACGATGAGGCGTCGATGTCATCGTCAGAAGGAAGAAGTGGGGAGCGCTCCCGGTCGCCGGGAAACACGGGAGAAGTAGCATCGTCGAAACGGCATAGCCCAGATCAATCTTCCAATTGGGGTTCCAATAATAACAATAATAACAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGAAGTGGATCAAACTGAAGCTACTATGAGAAAGGCTAGAGTCTCTGTTCGAGCCAGATCAGAAGCACCCATGATAACAGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTACTATCGTTGCACAATGGCTCTCGGCTGCCCCGTTAGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATATTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCGCCGGCCGCCATGGCCATGGCTTCCACGACATCATCGGCGGCAAGAATGCTTCTATCAGGATCCATGTCAAGTGCTGATGGTTTAATGAACTCCAATTTTTTAGCAAGAACCTTATTACCTTGTTCTTCAAGCATGGCTACAATCTCAGCCTCAGCTCCATTTCCCACCGTCACATTAGACCTAACTCAAACCCCTAATCCCTTATTCCAACGCCCCGCTACAGGTCACTTCCCCATCCCGTTCGCAGCCGCCACTCCCCCTCAAACCTTCCCACAGATCTTTGGACATGCTTTATACAATCAATCAAAATTCTCCGGCCTCCAAATGTCCAAGGATATCGAAGCACCGCCGCCTCCTCCACCTCCGCAAAATCCATTCACCGATACGTTGAGTGCGGCGGGTGCAGCCATCGCGTCTGACCCCAACTTCATTGCGGCGTTGGCAACAGCAATGACATCATACGACCGCAAAGTTTATCTTTTAGAACGTGGAAAATTGTAA 1404 46.01 MNFFPSDDKSRVLSASHSNLTPTKLPFNVNTGLNLLTTNSCSDQSMVDDGVSPNPEEKRVKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTEDVGDPIEENADGSGGGGNNNNNNNNTNISNKLVPRQFMDLGLATNTENDEASMSSSEGRSGERSRSPGNTGEVASSKRHSPDQSSNWGSNNNNNNKVPKFSSSSGKEVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMALGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPATGHFPIPFAAATPPQTFPQIFGHALYNQSKFSGLQMSKDIEAPPPPPPPQNPFTDTLSAAGAAIASDPNFIAALATAMTSYDRKVYLLERGKL* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3151990 3164563 - Chy1G004390.1 Chy01g00439 217620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00439 467 Gene3D WRKY domain 225 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy01g00439 467 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 7 455 IPR044810 GO:0003700
Chy01g00439 467 MobiDBLite consensus disorder prediction 112 138 - -
Chy01g00439 467 MobiDBLite consensus disorder prediction 154 218 - -
Chy01g00439 467 ProSiteProfiles WRKY domain profile. 235 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy01g00439 467 SUPERFAMILY WRKY DNA-binding domain 233 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy01g00439 467 Pfam WRKY DNA -binding domain 242 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy01g00439 467 MobiDBLite consensus disorder prediction 154 234 - -
Chy01g00439 467 Coils Coil 57 91 - -
Chy01g00439 467 MobiDBLite consensus disorder prediction 122 138 - -
Chy01g00439 467 PANTHER OS05G0567200 PROTEIN 7 455 - -
Chy01g00439 467 MobiDBLite consensus disorder prediction 410 430 - -
Chy01g00439 467 SMART WRKY_cls 240 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00439 Chy-Chr1:3151990 Chy12g01329 Chy-Chr12:17635968 5.41E-42 dispersed
Chy07g00332 Chy-Chr7:2700056 Chy01g00439 Chy-Chr1:3151990 4.15E-22 dispersed
Chy06g01098 Chy-Chr6:9215281 Chy01g00439 Chy-Chr1:3151990 1.38E-54 transposed
Chy01g00439 Chy-Chr1:3151990 Chy01g00511 Chy-Chr1:3690925 7.24E-13 wgd
Chy01g00439 Chy-Chr1:3151990 Chy02g00416 Chy-Chr2:2603287 2.94E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17270 PF03106 WRKY 2.70E-24 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00439 - - csv:101205587 783.482