Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00454 ATGGAAGGAGGTGGATCCAGTGGTAGCAGCTGTTCTTTCATGGCTACTTGTAACAGCACGACCAACAACAACAATTCTAATAACACTTCCTTGATGATGATGATGATCAATAAAACTAATAATAATCCTCAAACATTTGACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTTCTACTTCCAACAATAGCAATAATAATAATGTTCAAACTCAAACTCCTCTTTCTGCCTTTCTTCCTCAACCTCATACAAATAATAGTAATGATCATGTTGTTCCTCCTACTTCTACTTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTCACTGCTTATGTCAACTGTCAAAAGGTGGGTGCGCCGCCTGAAGTCGTAGCGAGGCTAGAGCAGGCATGCGCGGTGGCGACGGGAAGCTGTAGGGCGGCGGGGCATGGGAATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACTAAATATGAACAGGAGTTGACCAAACCTTTTAAAGAAGCAATGCTATTCTTCTCAAGAATTGAGTCTCAGCTCAAAGCCCAAGCAGTTTCTTCTGATGGTTTTGAGTTGGTTGGGCAAAACGAGTGCTCGAAGGATATTGAGGTTGATATGAATGAAAACTACATCGACCCTCAAGCTGAAGTGAAGGAACTCAAAGGCCAACTTCTACGCAAATACAGTGGATATCTTGGCAGCCTAAAACAAGAGTTTTTGAAGAAGAAGAAAAACGGAAAGTTACCAAAAGAAGCTCGACAACAATTGCTCGACTGGTGGAGCCGACACTACAAATGGCCTTATCCCTCGGTAAAATGTGATCGAGTGCAGGAATCGCAAAAGGTGGCATTGGCAGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGGAAGAGGCATTGGAAGCCAACAGAAGATATGCAATTTGTGGTGATGGATACTGGTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCGATGGATTGTTCCTCCTCTCATTTCTGA 1062 42.94 MEGGGSSGSSCSFMATCNSTTNNNNSNNTSLMMMMINKTNNNPQTFDNKMFLPLSWSSSTSNNSNNNNVQTQTPLSAFLPQPHTNNSNDHVVPPTSTSKAKIMAHPLFPRLLTAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGHGNDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKAQAVSSDGFELVGQNECSKDIEVDMNENYIDPQAEVKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSVKCDRVQESQKVALAESTGLDLKQINNWFINQRKRHWKPTEDMQFVVMDTGHPHYYLDNVICNPFSMDCSSSHF* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3263812 3268409 - Chy1G004540.1 Chy01g00454 217635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00454 353 CDD homeodomain 260 318 IPR001356 GO:0003677
Chy01g00454 353 Pfam ELK domain 228 249 IPR005539 GO:0003677
Chy01g00454 353 ProSiteProfiles ELK domain profile. 228 248 IPR005539 GO:0003677
Chy01g00454 353 SUPERFAMILY Homeodomain-like 250 332 IPR009057 -
Chy01g00454 353 SMART KNOX1_2 96 140 IPR005540 GO:0003677|GO:0005634
Chy01g00454 353 SMART ELK_2 228 249 IPR005539 GO:0003677
Chy01g00454 353 Gene3D - 253 322 - -
Chy01g00454 353 Pfam Homeobox KN domain 268 314 IPR008422 GO:0003677|GO:0006355
Chy01g00454 353 ProSitePatterns 'Homeobox' domain signature. 293 316 IPR017970 GO:0000981|GO:0006355
Chy01g00454 353 SMART HOX_1 250 322 IPR001356 GO:0003677
Chy01g00454 353 ProSiteProfiles 'Homeobox' domain profile. 287 318 IPR001356 GO:0003677
Chy01g00454 353 SMART KNOX2_2 143 194 IPR005541 GO:0003677|GO:0005634
Chy01g00454 353 Pfam KNOX2 domain 147 191 IPR005541 GO:0003677|GO:0005634
Chy01g00454 353 Pfam KNOX1 domain 99 136 IPR005540 GO:0003677|GO:0005634
Chy01g00454 353 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 3 344 - -
Chy01g00454 353 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00454 Chy-Chr1:3263812 Chy07g00220 Chy-Chr7:1794759 1.06E-80 dispersed
Chy01g00454 Chy-Chr1:3263812 Chy02g00425 Chy-Chr2:2674152 2.92E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00454 - - csv:101205039 638.647