Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00455 ATGGCACAGTTACCACCTAAGATCCCCAATATGTCTTCTAATTGGTCTGAATTTTCCCGTCAGAAAATCCCTTCCATGGAAACTTTTGCACCTACCACCACTACACCACCGGTTACTCAACAGAATCCTTCTTGGGTTGATGAATTTCTTGATTTCTCTTCCGTTAGACGTGGATCACATCGTCGGTCTGTTAGTGATTCCATCACATTCCTTGAAATGCCAATGCTGGAGGATGATTGTCGTGCCTCCGCTGCACCCCCACCACCGTCCACGGCAACCTGTGACCAGAATGAATTTGATAGATTTGATGACGAGCAATTCCTCTCGATGTTTAATGACGAAATCTCCGCTGCTGTTGCACCAACTTTGTCGTCGTCCAACCCTTCCACGCCGTCTGATCATAACAGTATTAACGATGAGAAAGATGAGCAAAACGATGGGAAGGTAAATCAGAATAAAAATGAACCCGACGAAGTACAGAGCCAACAGCAATCGGAAAATCAAACTCAATCCAATTCAACGGCGACGGCGGGTTCCACTGATCGGATAACAGACCCAAAAAGAGTGAAAAGAATTCTGGCAAATCGGCAATCGGCACAAAGATCACGAGTGAGGAAGCTTCAATACATATCAGAACTTGAACGAAGCGTTACATCATTACAGGCTGAAGTATCGGTATTGTCGCCGCGAGTGGCGTTTTTGGACCATCAGAGATTGCTTCTTAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCTCAGGATAAGATTTTTAAAGATG 790 45.44 MAQLPPKIPNMSSNWSEFSRQKIPSMETFAPTTTTPPVTQQNPSWVDEFLDFSSVRRGSHRRSVSDSITFLEMPMLEDDCRASAAPPPPSTATCDQNEFDRFDDEQFLSMFNDEISAAVAPTLSSSNPSTPSDHNSINDEKDEQNDGKVNQNKNEPDEVQSQQQSENQTQSNSTATAGSTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDX 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3295151 3296191 - Chy1G004550.1 Chy01g00455 217636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00455 264 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 237 IPR004827 GO:0003700|GO:0006355
Chy01g00455 264 MobiDBLite consensus disorder prediction 154 181 - -
Chy01g00455 264 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 190 205 IPR004827 GO:0003700|GO:0006355
Chy01g00455 264 MobiDBLite consensus disorder prediction 1 42 - -
Chy01g00455 264 MobiDBLite consensus disorder prediction 135 153 - -
Chy01g00455 264 PANTHER BASIC LEUCINE ZIPPER 34 1 263 - -
Chy01g00455 264 SUPERFAMILY Leucine zipper domain 187 241 IPR046347 GO:0003700|GO:0006355
Chy01g00455 264 Gene3D - 186 258 - -
Chy01g00455 264 MobiDBLite consensus disorder prediction 77 107 - -
Chy01g00455 264 Pfam bZIP transcription factor 187 231 IPR004827 GO:0003700|GO:0006355
Chy01g00455 264 SMART brlzneu 183 247 IPR004827 GO:0003700|GO:0006355
Chy01g00455 264 MobiDBLite consensus disorder prediction 119 134 - -
Chy01g00455 264 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 263 - -
Chy01g00455 264 MobiDBLite consensus disorder prediction 119 188 - -
Chy01g00455 264 CDD bZIP_plant_RF2 188 238 IPR044759 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00455 - - - csv:101205276 468.774
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy01g00455 Chy11g00653 CCT
Chy01g00455 Chy11g00653 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00455 Chy-Chr1:3295151 Chy10g00753 Chy-Chr10:13719995 4.35E-22 dispersed
Chy06g01143 Chy-Chr6:10013434 Chy01g00455 Chy-Chr1:3295151 8.89E-22 transposed
Chy07g00043 Chy-Chr7:404691 Chy01g00455 Chy-Chr1:3295151 5.23E-80 transposed
Chy12g00319 Chy-Chr12:3443950 Chy01g00455 Chy-Chr1:3295151 6.79E-09 transposed
Chy01g00455 Chy-Chr1:3295151 Chy11g00653 Chy-Chr11:7905677 8.80E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g210 . . . . . . . . Cmo11g01879 Cmo19g00926 . Cma20g00588 . Car20g00552 Sed01g0510 Cpe15g00729 Cpe04g00711 Bhi05g01374 Tan02g0389 Cmetu11g1602 Lac12g0542 Hepe02g0250 . . Cla02g00218 Cam02g0235 Cec02g0232 Cco02g0233 Clacu02g0228 Cmu02g0225 Cre02g0556 . . Cone8ag1416 Cone12ag1360 . Csa07g00329 Chy11g00653 Cme01g00456 . . Bda14g00770 Bda15g00966 . . . . . . Cmo20g00648 Cma11g01804 . Car11g01492 . Cpe16g00416 . Bhi10g01378 . . . . . . . . . . . . . Lsi11g01421 . Chy01g00455 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01222 . 88 323 bZIP Transcription Factor Family AT5G24800 50.6 2.3e-45 179.5
Chy06g02175 CCT 34 349 bZIP Transcription Factor Family AT2G35530 67.8 6.6e-105 377.9
Chy04g00130 CCT 1 344 bZIP Transcription Factor Family AT2G35530 61.7 4.9e-100 361.7
Chy10g00314 . 16 325 bZIP Transcription Factor Family AT2G40620 59.3 1.5e-84 310.1
Chy11g01164 . 65 397 bZIP Transcription Factor Family AT2G40620 50.3 1.8e-69 260.0
Chy03g00519 . 170 321 bZIP Transcription Factor Family AT2G40620 65.8 1.9e-42 170.2
Chy01g00730 . 384 518 bZIP Transcription Factor Family AT2G40620 67.1 2.8e-38 156.4
Chy11g00253 CCT 1 233 bZIP Transcription Factor Family AT4G35040 62.6 3.3e-65 245.4
Chy01g00682 CCT 1 265 bZIP Transcription Factor Family AT4G35040 58.2 3.2e-60 228.8
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT5G06950 80.7 8.7e-140 493.4
Chy10g01378 CCT 21 352 bZIP Transcription Factor Family AT5G06950 75.9 1.3e-130 463.0
Chy04g01664 . 136 468 bZIP Transcription Factor Family AT5G06950 73.0 8.2e-122 433.7
Chy03g00328 . 392 724 bZIP Transcription Factor Family AT5G06950 69.9 7.1e-118 420.6
Chy04g01760 . 146 440 bZIP Transcription Factor Family AT5G06950 60.6 3.9e-92 335.1
Chy07g01307 . 78 360 bZIP Transcription Factor Family AT5G06950 54.7 1.2e-75 280.4
Chy03g00061 . 107 412 bZIP Transcription Factor Family AT5G06950 50.6 1.6e-72 270.0
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT5G06950 54.8 2.0e-67 253.1
Chy03g00855 CCT 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.0e-98 355.1
Chy04g01760 . 123 440 bZIP Transcription Factor Family AT1G08320 58.8 8.3e-96 347.4
Chy04g01664 . 177 467 bZIP Transcription Factor Family AT1G08320 60.8 5.0e-93 338.2
Chy10g01378 CCT 64 351 bZIP Transcription Factor Family AT1G08320 60.4 1.2e-91 333.6
Chy03g00328 . 430 723 bZIP Transcription Factor Family AT1G08320 58.2 6.8e-90 327.8
Chy11g00902 . 382 623 bZIP Transcription Factor Family AT1G08320 64.5 2.0e-81 299.7
Chy11g00253 CCT 1 260 bZIP Transcription Factor Family AT2G16770 59.0 1.5e-64 243.0
Chy01g00682 CCT 1 265 bZIP Transcription Factor Family AT2G16770 57.5 2.5e-62 235.7
Chy03g00855 CCT 25 334 bZIP Transcription Factor Family AT5G06960 81.0 1.3e-129 459.5
Chy10g01378 CCT 52 352 bZIP Transcription Factor Family AT5G06960 77.1 9.4e-120 426.8
Chy04g01664 . 157 468 bZIP Transcription Factor Family AT5G06960 70.9 2.3e-110 395.6
Chy03g00328 . 418 724 bZIP Transcription Factor Family AT5G06960 68.4 2.0e-106 382.5
Chy04g01760 . 132 440 bZIP Transcription Factor Family AT5G06960 59.9 2.0e-90 329.3
Chy07g01307 . 53 360 bZIP Transcription Factor Family AT5G06960 51.9 7.8e-74 274.2
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT5G06960 54.8 4.9e-68 255.0
Chy01g00730 . 1 566 bZIP Transcription Factor Family AT4G38900 56.5 5.8e-133 471.5
Chy03g00519 . 115 306 bZIP Transcription Factor Family AT4G38900 54.4 1.4e-38 157.9
Chy01g01284 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 2.7e-37 153.7
Chy10g00314 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 7.8e-37 152.1
Chy01g01284 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 5.2e-38 156.0
Chy01g00455 CCT,ECH 1 263 bZIP Transcription Factor Family AT2G42380 58.2 5.5e-68 254.6
Chy03g01549 . 27 353 bZIP Transcription Factor Family AT1G45249 55.8 1.9e-83 306.6
Chy03g00502 . 67 259 bZIP Transcription Factor Family AT1G03970 56.2 3.8e-40 162.2
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT3G12250 80.9 1.5e-139 492.7
Chy10g01378 CCT 21 352 bZIP Transcription Factor Family AT3G12250 75.6 1.4e-129 459.5
Chy04g01664 . 136 468 bZIP Transcription Factor Family AT3G12250 73.4 1.1e-121 433.3
Chy03g00328 . 392 724 bZIP Transcription Factor Family AT3G12250 69.1 2.3e-116 415.6
Chy04g01760 . 146 440 bZIP Transcription Factor Family AT3G12250 59.9 4.4e-91 331.6
Chy07g01307 . 47 360 bZIP Transcription Factor Family AT3G12250 52.1 5.2e-76 281.6
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT3G12250 56.0 1.0e-68 257.3
Chy03g00328 . 272 724 bZIP Transcription Factor Family AT1G68640 62.6 1.4e-143 506.5
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT1G68640 67.5 1.2e-115 413.7
Chy04g01664 . 134 468 bZIP Transcription Factor Family AT1G68640 66.0 1.0e-111 400.6
Chy10g01378 CCT 18 352 bZIP Transcription Factor Family AT1G68640 64.2 1.7e-109 393.3
Chy04g01760 . 134 440 bZIP Transcription Factor Family AT1G68640 55.3 4.0e-87 318.9
Chy03g00519 . 31 345 bZIP Transcription Factor Family AT1G43700 53.8 9.2e-68 254.2
Chy01g01284 . 12 293 bZIP Transcription Factor Family AT1G43700 52.1 2.8e-64 242.7
Chy06g00123 . 11 421 bZIP Transcription Factor Family AT2G46270 50.1 1.1e-79 293.9
Chy06g00824 . 42 383 bZIP Transcription Factor Family AT2G31370 66.0 1.2e-106 383.6
Chy06g00833 . 45 360 bZIP Transcription Factor Family AT2G31370 67.0 1.0e-102 370.5
Chy10g00314 . 25 248 bZIP Transcription Factor Family AT2G31370 52.2 3.2e-48 189.5
Chy01g00455 CCT,ECH 1 263 bZIP Transcription Factor Family AT3G58120 52.4 2.0e-63 239.6
Chy06g02175 CCT 27 351 bZIP Transcription Factor Family AT1G32150 65.5 1.4e-99 360.1
Chy04g00130 CCT 1 345 bZIP Transcription Factor Family AT1G32150 60.2 9.1e-96 347.4
Chy06g00824 . 10 379 bZIP Transcription Factor Family AT1G06070 65.1 2.8e-119 425.6
Chy06g00833 . 1 359 bZIP Transcription Factor Family AT1G06070 68.0 1.4e-118 423.3
Chy01g00730 . 382 526 bZIP Transcription Factor Family AT1G06070 64.6 3.2e-38 156.4
Chy03g01549 . 27 353 bZIP Transcription Factor Family AT1G45249 55.8 1.9e-83 306.6
Chy06g02175 CCT 34 349 bZIP Transcription Factor Family AT2G35530 67.8 6.6e-105 377.9
Chy04g00130 CCT 1 344 bZIP Transcription Factor Family AT2G35530 61.7 4.9e-100 361.7
Chy10g00314 . 16 325 bZIP Transcription Factor Family AT2G40620 59.3 1.5e-84 310.1
Chy11g01164 . 65 397 bZIP Transcription Factor Family AT2G40620 50.3 1.8e-69 260.0
Chy03g00519 . 170 321 bZIP Transcription Factor Family AT2G40620 65.8 1.9e-42 170.2
Chy01g00730 . 384 518 bZIP Transcription Factor Family AT2G40620 67.1 2.8e-38 156.4
Chy11g00253 CCT 1 233 bZIP Transcription Factor Family AT4G35040 62.6 3.3e-65 245.4
Chy01g00682 CCT 1 265 bZIP Transcription Factor Family AT4G35040 58.2 3.2e-60 228.8
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT5G06950 80.7 8.7e-140 493.4
Chy10g01378 CCT 21 352 bZIP Transcription Factor Family AT5G06950 75.9 1.3e-130 463.0
Chy04g01664 . 136 468 bZIP Transcription Factor Family AT5G06950 73.0 8.2e-122 433.7
Chy03g00328 . 392 724 bZIP Transcription Factor Family AT5G06950 69.9 7.1e-118 420.6
Chy04g01760 . 146 440 bZIP Transcription Factor Family AT5G06950 60.6 3.9e-92 335.1
Chy07g01307 . 78 360 bZIP Transcription Factor Family AT5G06950 54.7 1.2e-75 280.4
Chy03g00061 . 107 412 bZIP Transcription Factor Family AT5G06950 50.6 1.6e-72 270.0
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT5G06950 54.8 2.0e-67 253.1
Chy03g00855 CCT 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.0e-98 355.1
Chy04g01760 . 123 440 bZIP Transcription Factor Family AT1G08320 58.8 8.3e-96 347.4
Chy04g01664 . 177 467 bZIP Transcription Factor Family AT1G08320 60.8 5.0e-93 338.2
Chy10g01378 CCT 64 351 bZIP Transcription Factor Family AT1G08320 60.4 1.2e-91 333.6
Chy03g00328 . 430 723 bZIP Transcription Factor Family AT1G08320 58.2 6.8e-90 327.8
Chy11g00902 . 382 623 bZIP Transcription Factor Family AT1G08320 64.5 2.0e-81 299.7
Chy11g00253 CCT 1 260 bZIP Transcription Factor Family AT2G16770 59.0 1.5e-64 243.0
Chy01g00682 CCT 1 265 bZIP Transcription Factor Family AT2G16770 57.5 2.5e-62 235.7
Chy03g00855 CCT 25 334 bZIP Transcription Factor Family AT5G06960 81.0 1.3e-129 459.5
Chy10g01378 CCT 52 352 bZIP Transcription Factor Family AT5G06960 77.1 9.4e-120 426.8
Chy04g01664 . 157 468 bZIP Transcription Factor Family AT5G06960 70.9 2.3e-110 395.6
Chy03g00328 . 418 724 bZIP Transcription Factor Family AT5G06960 68.4 2.0e-106 382.5
Chy04g01760 . 132 440 bZIP Transcription Factor Family AT5G06960 59.9 2.0e-90 329.3
Chy07g01307 . 53 360 bZIP Transcription Factor Family AT5G06960 51.9 7.8e-74 274.2
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT5G06960 54.8 4.9e-68 255.0
Chy01g00730 . 1 566 bZIP Transcription Factor Family AT4G38900 56.5 5.8e-133 471.5
Chy03g00519 . 115 306 bZIP Transcription Factor Family AT4G38900 54.4 1.4e-38 157.9
Chy01g01284 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 2.7e-37 153.7
Chy10g00314 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 7.8e-37 152.1
Chy01g01284 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 5.2e-38 156.0
Chy01g00455 CCT,ECH 1 263 bZIP Transcription Factor Family AT2G42380 58.2 5.5e-68 254.6
Chy03g00502 . 67 259 bZIP Transcription Factor Family AT1G03970 56.2 3.8e-40 162.2
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT3G12250 80.9 1.5e-139 492.7
Chy10g01378 CCT 21 352 bZIP Transcription Factor Family AT3G12250 75.6 1.4e-129 459.5
Chy04g01664 . 136 468 bZIP Transcription Factor Family AT3G12250 73.4 1.1e-121 433.3
Chy03g00328 . 392 724 bZIP Transcription Factor Family AT3G12250 69.1 2.3e-116 415.6
Chy04g01760 . 146 440 bZIP Transcription Factor Family AT3G12250 59.9 4.4e-91 331.6
Chy07g01307 . 47 360 bZIP Transcription Factor Family AT3G12250 52.1 5.2e-76 281.6
Chy11g00902 . 384 625 bZIP Transcription Factor Family AT3G12250 56.0 1.0e-68 257.3
Chy03g00328 . 272 724 bZIP Transcription Factor Family AT1G68640 62.6 1.4e-143 506.5
Chy03g00855 CCT 6 334 bZIP Transcription Factor Family AT1G68640 67.5 1.2e-115 413.7
Chy04g01664 . 134 468 bZIP Transcription Factor Family AT1G68640 66.0 1.0e-111 400.6
Chy10g01378 CCT 18 352 bZIP Transcription Factor Family AT1G68640 64.2 1.7e-109 393.3
Chy04g01760 . 134 440 bZIP Transcription Factor Family AT1G68640 55.3 4.0e-87 318.9
Chy03g00519 . 31 345 bZIP Transcription Factor Family AT1G43700 53.8 9.2e-68 254.2
Chy01g01284 . 12 293 bZIP Transcription Factor Family AT1G43700 52.1 2.8e-64 242.7
Chy06g00123 . 11 421 bZIP Transcription Factor Family AT2G46270 50.1 1.1e-79 293.9
Chy06g00824 . 42 383 bZIP Transcription Factor Family AT2G31370 66.0 1.2e-106 383.6
Chy06g00833 . 45 360 bZIP Transcription Factor Family AT2G31370 67.0 1.0e-102 370.5
Chy10g00314 . 25 248 bZIP Transcription Factor Family AT2G31370 52.2 3.2e-48 189.5
Chy01g00455 CCT,ECH 1 263 bZIP Transcription Factor Family AT3G58120 52.4 2.0e-63 239.6
Chy06g02175 CCT 27 351 bZIP Transcription Factor Family AT1G32150 65.5 1.4e-99 360.1
Chy04g00130 CCT 1 345 bZIP Transcription Factor Family AT1G32150 60.2 9.1e-96 347.4
Chy06g00824 . 10 379 bZIP Transcription Factor Family AT1G06070 65.1 2.8e-119 425.6
Chy06g00833 . 1 359 bZIP Transcription Factor Family AT1G06070 68.0 1.4e-118 423.3
Chy01g00730 . 382 526 bZIP Transcription Factor Family AT1G06070 64.6 3.2e-38 156.4
Chy03g01222 . 88 323 bZIP Transcription Factor Family AT5G24800 50.6 2.3e-45 179.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000658 3 3 2 3 3 1 5 3 2 3 2 2 4 3 3 5 2 5 5 3 3 3 3 3 3 3 3 9 3 3 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17273 PF07716 bZIP_2 2.50E-09 CL0018 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00455 Chy_Chr01 FPKM 101.219215 106.757561 68.725433 67.18026 68.827682 78.657204 62.897552 71.928017 71.901627 69.141182