Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00470 ATGTCTGAAGAGCAAACAATTTCAAATGCTTTCATTTGCAGCATCACATCACTTGGATCCATCAACAACAACAACAATCCTTCTGTTATTGTCAAGAAGAAGAGGAATCTCCCAGGAAATCCAGGCAAGAACAAAAAAAGAGCTTTGCACTTATATGATCTTCTTTTTACTATTTTTGTGGCTTATGTTTCTTCTTTGTATCCTGAAGCGGAAGTAGTGTCGTTGTCACCAAAGACACTAATGGCGACGAACCGATTCTTGTGTGAGATATGTGGGAAGGGATTTCAAAGAGATCAAAACCTACAACTACATAGGAGAGGACACAATCTTCCATGGAAGCTAAAGCAAAGAAGCAATGGAAACAAAGAGCCAAGAAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTTCATCATCATCCTTCAAGGGCTCTTGGAGATCTCACAGGAATTAAAAAGCACTTTTGTAGGAAGCATGGGGAGAAAAAGTGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTGCAATCAGATTGGAAAGCACACTCCAAAACATGTGGTACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGATAGCTATGTCACTCATAGAGCATATTGTGTAGCATTGGCAGAAGAAACAGCAAGATTAAATGCAGCATCAACCCACATTGCCAACAACAACAATTCATTAGCTGATAATTACAGCAACAACAACAATCCTCCTCAATTCAATGAAGAACAACAATCATCCCATCAATTTATGTCTTCATCATCCAACATGTCAGCTACTGTTTTACTACAAAAAGCTGCACAAATTGGTGTTACAACCGATCACCCTTCATCATTGATGGAAAGTTTTGGTTTGAAATTCAGTTCAATAACTGATGGCAAAGCCTTGCTTTCAGGGATTTATGGGTCAATGATAAACTCCAATTCCAATAATGTTATTATTCCTCTTAGTGAAGAAAATCATCATCATCATCACTACTCTGCACCACCAGCAAAGAGAATGAGACATACTGTCAGTGAAGAGAGTGTTAATGGTGGAGATGGAGAAACAAGGGATTTCTTGGGTGTGGGAATGCACACCATATGTCATCCATCAACAGTAAATGGATGGATCTGA 1143 38.76 MSEEQTISNAFICSITSLGSINNNNNPSVIVKKKRNLPGNPGKNKKRALHLYDLLFTIFVAYVSSLYPEAEVVSLSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNGNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASTHIANNNNSLADNYSNNNNPPQFNEEQQSSHQFMSSSSNMSATVLLQKAAQIGVTTDHPSSLMESFGLKFSSITDGKALLSGIYGSMINSNSNNVIIPLSEENHHHHHYSAPPAKRMRHTVSEESVNGGDGETRDFLGVGMHTICHPSTVNGWI* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3401406 3404284 + Chy1G004700.1 Chy01g00470 217651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00470 380 SUPERFAMILY beta-beta-alpha zinc fingers 85 184 IPR036236 -
Chy01g00470 380 SMART c2h2final6 164 184 IPR013087 -
Chy01g00470 380 SMART c2h2final6 86 108 IPR013087 -
Chy01g00470 380 PANTHER ZINC FINGER PROTEIN MAGPIE 25 256 - -
Chy01g00470 380 PANTHER ZINC FINGER PROTEIN MAGPIE 249 374 - -
Chy01g00470 380 Gene3D Classic Zinc Finger 120 212 - -
Chy01g00470 380 Pfam Zinc finger, C2H2 type 87 108 IPR013087 -
Chy01g00470 380 Gene3D Classic Zinc Finger 82 109 - -
Chy01g00470 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Chy01g00470 380 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 249 374 - -
Chy01g00470 380 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 256 - -
Chy01g00470 380 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g00470 Chy11g00664 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00470 Chy-Chr1:3401406 Chy02g00663 Chy-Chr2:4027016 1.07E-99 dispersed
Chy12g00769 Chy-Chr12:11794489 Chy01g00470 Chy-Chr1:3401406 2.31E-24 transposed
Chy01g00470 Chy-Chr1:3401406 Chy11g00664 Chy-Chr11:8175368 1.81E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17274 PF00096 zf-C2H2 0.012 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00470 K25870 - csv:101207997 394.815