Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00478 ATGCCGAAGAACAAGGGAAAAGGAGGAAAGAATAGGAAGAGAGGTAAGAACGAGGCAGATGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGACAGGAATATGCTCAAGTGCTTCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATTGATGGAACTAAACGTCTTTGTCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTAGTTGGTCTTCGTGACTATCAAGATGACAAAGCTGATGTGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTTGAAAGCTTACGGTGAGTTACCTGAGAATACACGTCTTAATGAGGGTATTGTTGGGGGTATGGATGACGACGACGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATCTAG 438 42.69 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI* 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3461190 3461627 + Chy1G004780.1 Chy01g00478 217659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00478 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 1 145 - -
Chy01g00478 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Chy01g00478 145 MobiDBLite consensus disorder prediction 1 25 - -
Chy01g00478 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Chy01g00478 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Chy01g00478 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Chy01g00478 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Chy01g00478 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Chy01g00478 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Chy01g00478 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Chy01g00478 145 Gene3D - 2 145 IPR012340 -
Chy01g00478 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00478 Chy-Chr1:3461190 Chy11g00291 Chy-Chr11:2686624 1.09E-83 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00478 K03236 - csv:101207840 253.832