Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00528 ATGGAAACAAACTGTAGTGAATTCAACCTTGGAGATGTTCTTGACGTTGTAACAAATCAAACCATGACTTTGAGCCGAGAGCGTGAGGTGAAGATCATTTGTGAATCACTTGCCGATGTGTCATCTCTGCACTTATATGGAGATAACTTGAGGCTACAGCAAGTGCTCTCTGAGTTCTTGACGAACACGCTTCTCTTCACTTGCAAAGAATCATCTGTCATCTTTAAAGCAACTCCAAGGAAGGAGCGCATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGGATCACCCATCCCACTCCAGGAATTCCTGCACACTTAATCCAAGAGATGTTCGACGACAACAACGATAGCTCAAAGGAAGGTCTTGGCTTATACATAAGCCAGAAGCTAGTGAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGCCGAAACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTAGAGCATGTTGCTAGATGA 498 43.78 METNCSEFNLGDVLDVVTNQTMTLSREREVKIICESLADVSSLHLYGDNLRLQQVLSEFLTNTLLFTCKESSVIFKATPRKERIGKGIHIVHLELRITHPTPGIPAHLIQEMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYLREAETSSFIILIEFPLVEHVAR* 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3757593 3758707 - Chy1G005280.1 Chy01g00528 217709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00528 165 ProSiteProfiles Histidine kinase domain profile. 1 161 IPR005467 -
Chy01g00528 165 PANTHER TWO-COMPONENT HISTIDINE KINASE 9 162 - -
Chy01g00528 165 SMART HKATPase_4 47 161 IPR003594 -
Chy01g00528 165 PANTHER PHYTOCHROME C 9 162 - -
Chy01g00528 165 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 47 153 IPR003594 -
Chy01g00528 165 Gene3D - 1 163 IPR036890 -
Chy01g00528 165 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3 155 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00528 - - - csv:101211915 325.094
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00528 Chy-Chr1:3757593 Chy06g00756 Chy-Chr6:5211189 6.49E-35 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g02240 . 5 1196 Histidine Kinase Gene Family AT2G17820 65.3 0.0e+00 1457.2
Chy10g00085 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1350.9
Chy11g01787 . 58 1002 Histidine Kinase Gene Family AT2G01830 53.3 2.9e-274 941.8
Chy11g00704 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.1 2.2e-269 925.6
Chy07g00300 . 1 995 Histidine Kinase Gene Family AT5G10720 57.3 3.3e-290 994.6
Chy03g00986 . 35 1154 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1822.4
Chy03g00990 . 3 1144 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1617.4
Chy06g00756 . 34 1121 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1192.9
Chy01g00529 . 18 952 Histidine Kinase Gene Family AT1G09570 57.0 0.0e+00 1082.8
Chy06g00756 . 13 1062 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1665.6
Chy12g00013 . 21 1043 Histidine Kinase Gene Family AT2G18790 59.6 0.0e+00 1239.9
Chy03g00986 . 55 1088 Histidine Kinase Gene Family AT2G18790 53.2 0.0e+00 1085.9
Chy03g00990 . 22 1077 Histidine Kinase Gene Family AT2G18790 50.9 1.8e-306 1048.9
Chy01g00529 . 26 952 Histidine Kinase Gene Family AT2G18790 56.0 8.2e-299 1023.5
Chy01g00529 . 18 954 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1223.8
Chy06g00756 . 21 1123 Histidine Kinase Gene Family AT5G35840 53.1 0.0e+00 1150.2
Chy03g00986 . 43 1148 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1114.4
Chy01g00528 . 1 160 Histidine Kinase Gene Family AT5G35840 52.4 9.3e-37 152.9
Chy06g00756 . 3 1123 Histidine Kinase Gene Family AT4G16250 75.9 0.0e+00 1712.2
Chy12g00013 . 22 1105 Histidine Kinase Gene Family AT4G16250 57.7 0.0e+00 1283.5
Chy03g00986 . 42 1149 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1137.9
Chy01g00529 . 26 952 Histidine Kinase Gene Family AT4G16250 54.4 1.2e-292 1003.0
Chy12g00013 . 31 1119 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1375.5
Chy06g00756 . 38 1121 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1271.5
Chy01g00529 . 27 952 Histidine Kinase Gene Family AT4G18130 50.1 3.2e-255 878.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024794 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00528 Chy_Chr01 FPKM 1.011324 0.989366 1.257924 1.154642 20.03056 19.835234 19.859388 7.068975 7.485219 5.590915