Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00529 ATGTCTTCAACGTCAACAAATAAGACTGTGTGTTCCAAGACCAGCTTTGACCGATCGAAACATGGGGCTCATGTGGTTGCGCAGACCCCAATTGATGCGAAGCTTCATGTAGACTTTGAAGGTTCTGAAAGGTTGTTTGATTACTCTGCATCGGTTGATTTCAATGCCGCTTGTTCCACTAGCAATGTTCATGCTTCCACTGTACATTCATACCTTCAAAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGACGGGGAAAACTTGTCTGTTCTTGCATATAGTGAAAATGCCCCCGAAATGTTGGACTTGGCCCCACACGCTGTGCCTAACATCGAGCAGCAAGAAGCTTTAACTTTTGGAACAGATGTACGAACTCTTTTTCGTTCACCTGGAGCTGCAGCTTTGCAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATTCTAGTCCATTGTAGAACTTCTGGTAAACCGTTTTATGCAATTTTGCATCGAATAGACGTGGGATTAATTATAGATCTGGAACCGGTGAACCCAGCTGATGTACCAGTGACTGCAGCTGGGGCATTGAAATCTTATAAGTTAGCAGCCAAAGCCATCTCAAAATTGCAGAACTTGCAAAGTGGGAATATATCTCTTTTGTGTGAGGTATTGGTTAAGGAGGTTAGCGATTTGACAGGTTATGATCGAGTAATGGTGTATAAATTCCACGATGATGAACATGGAGAAGTTGTAGCTGAGTGCTGTCGATCAGACTTAGAACCATATTTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCACGGTTCCTGTTTTTGAAGAATAAAGTTAGAATGATATGTGATTGTTTGGCACCTCCGGTTAAAGTGCTTCAAGACAGGAGATTAGCTCAGCCATTAGGTTTATGTGGGTCTGCATTGAGGGCTCCTCATGGTTGTCATGCTCGATATATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACGATCAATGAGAATGATAGTGAATCAGAAAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACTAGCCCTAGGTTTGTTCCATTTCCTTTGCGATATGCTTGTGAATTCTTGATTCAAGTATTTGGTATACAGATTAACAAAGAGGTGGAGTTGCAAGCTCAGTTGAAGGAAAAACACATCTTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGATGCTCCGGTAGGAATTGTTACTCAATCTCCAAATATTATGGATCTTGTTAAGTGCGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGTTACTTGGAGTCACCCCCACAGAGGCGCAAATTAGAAATATAGCGGACTGGCTTCTCAAAGATCATAGTGGAAGCACAGGTTTAAGTACTGATAGCCTTACTGAAGCGGGTTTCTATGGTGCTTCTGCGCTTGGTGATGAGATTTGTGGAATGGCTGCTGTTAGGATCACATCTAAGGACTTCCTTTTCTGGTTTCGATCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTAGTGATGAGGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATTCATTCACTGCAATTAATCTTACGAGGTTCTTTACAGGATGAAATTGAAGAAGAATGCAAGGTGATTACAACTGTCCCACCAGTTGATGAGAAGACGCAACAATTGGATGAATTGCGCGTCATTACAAATGAGATGGTTCGCCTAATTGAAACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTTGGCAAGATCAATGGTTGGAATTCCAAAGCCACTGAGCTTACAGGATTGGCCATCCAGGAAGCCGTTGGCATGCCCTTAGTTGATTGTGTGGTGAATGATTCTGTTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCATTCAAGGTATTGAAGAGAAGAACGTTGAAATCAAACTCAAAACATTTGGAACTGCAGTACAAAATGGTCCAGTGATCTTAGAAGTTAACTCATGTTGTAGCCGAGACTTAAACAATAATGTTGTAGGAGTTTCTTTTATAGGGCAGGATGTAACGAAGCAAAAACTGGTAATGAACCAATACACCCAAATCCAAGGTGATTACACAGGGATTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGGCCGATAGCGAGGGCCGGTGCTTGGAGTGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGGTAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACGCTTGAAAACTTTGGATGCCGTGTGAAAGATCACACGTTGACCAAGCTTAGGATAATACTGCATAGAGTAATTTCAGGCCAGGATACAGAGAAATTTTTGTTTCGGTTCTGTGATCGTGAAGGAAACTACGTTGAATCATTGCTTACTGCAAGCAAAAGGACTGATACAGAGGGTACTGTCACTGGGGTTTTCTTCTTCTTGCATGTGGCTAGTCCAGAGCTTCAATATGCTTTGGAGATGCAGTGGATTTCCGAACAAGCTACAGCGGAAAATCTCCATAAATTGGCATATCTGCGTCAAGAAATTCGAAAACCCCTTGATGGGATTGCACTTATGCAGAATCTAATAAGTTCATCTGACTTAAGCATAGAGCAAAAACAGCTAATTAAATTGAACACTTTGAGTCGAGAACAATTACACAAGATTGTACATGATACTGATATCCAGAGTATTGAGGAATGGTATGATCATAGACACATCAATACTTTTTTTTTTCTTTTTCCTATTTGGCTTCAATACGTTACTATAATCTTCTGA 2934 41.24 MSSTSTNKTVCSKTSFDRSKHGAHVVAQTPIDAKLHVDFEGSERLFDYSASVDFNAACSTSNVHASTVHSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCRTSGKPFYAILHRIDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQNLQSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPYFGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLAQPLGLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQAQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVKCDGAALYFRKKFWLLGVTPTEAQIRNIADWLLKDHSGSTGLSTDSLTEAGFYGASALGDEICGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPSDEDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEIEEECKVITTVPPVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQEAVGMPLVDCVVNDSVKVVKKMLSLAIQGIEEKNVEIKLKTFGTAVQNGPVILEVNSCCSRDLNNNVVGVSFIGQDVTKQKLVMNQYTQIQGDYTGIMRNPSALIPPIFMADSEGRCLEWNDAMEKLSGFRRVEMTNRMLLGEVFTLENFGCRVKDHTLTKLRIILHRVISGQDTEKFLFRFCDREGNYVESLLTASKRTDTEGTVTGVFFFLHVASPELQYALEMQWISEQATAENLHKLAYLRQEIRKPLDGIALMQNLISSSDLSIEQKQLIKLNTLSREQLHKIVHDTDIQSIEEWYDHRHINTFFFLFPIWLQYVTIIF* 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3758734 3762099 - Chy1G005290.1 Chy01g00529 217710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00529 977 Pfam PAS fold 616 730 IPR013767 GO:0006355
Chy01g00529 977 Pfam PAS fold 756 867 IPR013767 GO:0006355
Chy01g00529 977 PANTHER PHYTOCHROME C 1 959 - -
Chy01g00529 977 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Chy01g00529 977 Gene3D PAS domain 601 744 - -
Chy01g00529 977 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Chy01g00529 977 Gene3D PAS domain 759 870 - -
Chy01g00529 977 Gene3D PAS domain 74 322 - -
Chy01g00529 977 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 959 - -
Chy01g00529 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Chy01g00529 977 Gene3D - 403 576 IPR043150 -
Chy01g00529 977 CDD PAS 757 867 IPR000014 -
Chy01g00529 977 SMART gaf_1 219 408 IPR003018 GO:0005515
Chy01g00529 977 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Chy01g00529 977 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Chy01g00529 977 TIGRFAM sensory_box: PAS domain S-box protein 620 734 IPR000014 -
Chy01g00529 977 TIGRFAM sensory_box: PAS domain S-box protein 760 866 IPR000014 -
Chy01g00529 977 SUPERFAMILY GAF domain-like 199 395 - -
Chy01g00529 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Chy01g00529 977 SMART pas_2 745 815 IPR000014 -
Chy01g00529 977 SMART pas_2 615 681 IPR000014 -
Chy01g00529 977 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Chy01g00529 977 SUPERFAMILY GAF domain-like 406 586 - -
Chy01g00529 977 Gene3D - 200 559 IPR029016 -
Chy01g00529 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 733 IPR035965 -
Chy01g00529 977 Pfam GAF domain 220 398 IPR003018 GO:0005515
Chy01g00529 977 CDD PAS 624 730 IPR000014 -
Chy01g00529 977 Pfam PAS fold 71 186 IPR013654 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00529 Chy-Chr1:3758734 Chy03g00986 Chy-Chr3:13388886 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00529 - - csv:101211915 1847.4