Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00529 ATGTCTTCAACGTCAACAAATAAGACTGTGTGTTCCAAGACCAGCTTTGACCGATCGAAACATGGGGCTCATGTGGTTGCGCAGACCCCAATTGATGCGAAGCTTCATGTAGACTTTGAAGGTTCTGAAAGGTTGTTTGATTACTCTGCATCGGTTGATTTCAATGCCGCTTGTTCCACTAGCAATGTTCATGCTTCCACTGTACATTCATACCTTCAAAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGACGGGGAAAACTTGTCTGTTCTTGCATATAGTGAAAATGCCCCCGAAATGTTGGACTTGGCCCCACACGCTGTGCCTAACATCGAGCAGCAAGAAGCTTTAACTTTTGGAACAGATGTACGAACTCTTTTTCGTTCACCTGGAGCTGCAGCTTTGCAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATTCTAGTCCATTGTAGAACTTCTGGTAAACCGTTTTATGCAATTTTGCATCGAATAGACGTGGGATTAATTATAGATCTGGAACCGGTGAACCCAGCTGATGTACCAGTGACTGCAGCTGGGGCATTGAAATCTTATAAGTTAGCAGCCAAAGCCATCTCAAAATTGCAGAACTTGCAAAGTGGGAATATATCTCTTTTGTGTGAGGTATTGGTTAAGGAGGTTAGCGATTTGACAGGTTATGATCGAGTAATGGTGTATAAATTCCACGATGATGAACATGGAGAAGTTGTAGCTGAGTGCTGTCGATCAGACTTAGAACCATATTTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCACGGTTCCTGTTTTTGAAGAATAAAGTTAGAATGATATGTGATTGTTTGGCACCTCCGGTTAAAGTGCTTCAAGACAGGAGATTAGCTCAGCCATTAGGTTTATGTGGGTCTGCATTGAGGGCTCCTCATGGTTGTCATGCTCGATATATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACGATCAATGAGAATGATAGTGAATCAGAAAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACTAGCCCTAGGTTTGTTCCATTTCCTTTGCGATATGCTTGTGAATTCTTGATTCAAGTATTTGGTATACAGATTAACAAAGAGGTGGAGTTGCAAGCTCAGTTGAAGGAAAAACACATCTTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGATGCTCCGGTAGGAATTGTTACTCAATCTCCAAATATTATGGATCTTGTTAAGTGCGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGTTACTTGGAGTCACCCCCACAGAGGCGCAAATTAGAAATATAGCGGACTGGCTTCTCAAAGATCATAGTGGAAGCACAGGTTTAAGTACTGATAGCCTTACTGAAGCGGGTTTCTATGGTGCTTCTGCGCTTGGTGATGAGATTTGTGGAATGGCTGCTGTTAGGATCACATCTAAGGACTTCCTTTTCTGGTTTCGATCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTAGTGATGAGGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATTCATTCACTGCAATTAATCTTACGAGGTTCTTTACAGGATGAAATTGAAGAAGAATGCAAGGTGATTACAACTGTCCCACCAGTTGATGAGAAGACGCAACAATTGGATGAATTGCGCGTCATTACAAATGAGATGGTTCGCCTAATTGAAACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTTGGCAAGATCAATGGTTGGAATTCCAAAGCCACTGAGCTTACAGGATTGGCCATCCAGGAAGCCGTTGGCATGCCCTTAGTTGATTGTGTGGTGAATGATTCTGTTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCATTCAAGGTATTGAAGAGAAGAACGTTGAAATCAAACTCAAAACATTTGGAACTGCAGTACAAAATGGTCCAGTGATCTTAGAAGTTAACTCATGTTGTAGCCGAGACTTAAACAATAATGTTGTAGGAGTTTCTTTTATAGGGCAGGATGTAACGAAGCAAAAACTGGTAATGAACCAATACACCCAAATCCAAGGTGATTACACAGGGATTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGGCCGATAGCGAGGGCCGGTGCTTGGAGTGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGGTAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACGCTTGAAAACTTTGGATGCCGTGTGAAAGATCACACGTTGACCAAGCTTAGGATAATACTGCATAGAGTAATTTCAGGCCAGGATACAGAGAAATTTTTGTTTCGGTTCTGTGATCGTGAAGGAAACTACGTTGAATCATTGCTTACTGCAAGCAAAAGGACTGATACAGAGGGTACTGTCACTGGGGTTTTCTTCTTCTTGCATGTGGCTAGTCCAGAGCTTCAATATGCTTTGGAGATGCAGTGGATTTCCGAACAAGCTACAGCGGAAAATCTCCATAAATTGGCATATCTGCGTCAAGAAATTCGAAAACCCCTTGATGGGATTGCACTTATGCAGAATCTAATAAGTTCATCTGACTTAAGCATAGAGCAAAAACAGCTAATTAAATTGAACACTTTGAGTCGAGAACAATTACACAAGATTGTACATGATACTGATATCCAGAGTATTGAGGAATGGTATGATCATAGACACATCAATACTTTTTTTTTTCTTTTTCCTATTTGGCTTCAATACGTTACTATAATCTTCTGA 2934 41.24 MSSTSTNKTVCSKTSFDRSKHGAHVVAQTPIDAKLHVDFEGSERLFDYSASVDFNAACSTSNVHASTVHSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCRTSGKPFYAILHRIDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQNLQSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPYFGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLAQPLGLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQAQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVKCDGAALYFRKKFWLLGVTPTEAQIRNIADWLLKDHSGSTGLSTDSLTEAGFYGASALGDEICGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPSDEDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEIEEECKVITTVPPVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQEAVGMPLVDCVVNDSVKVVKKMLSLAIQGIEEKNVEIKLKTFGTAVQNGPVILEVNSCCSRDLNNNVVGVSFIGQDVTKQKLVMNQYTQIQGDYTGIMRNPSALIPPIFMADSEGRCLEWNDAMEKLSGFRRVEMTNRMLLGEVFTLENFGCRVKDHTLTKLRIILHRVISGQDTEKFLFRFCDREGNYVESLLTASKRTDTEGTVTGVFFFLHVASPELQYALEMQWISEQATAENLHKLAYLRQEIRKPLDGIALMQNLISSSDLSIEQKQLIKLNTLSREQLHKIVHDTDIQSIEEWYDHRHINTFFFLFPIWLQYVTIIF* 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3758734 3762099 - Chy1G005290.1 Chy01g00529 217710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00529 977 Pfam PAS fold 616 730 IPR013767 GO:0006355
Chy01g00529 977 Pfam PAS fold 756 867 IPR013767 GO:0006355
Chy01g00529 977 PANTHER PHYTOCHROME C 1 959 - -
Chy01g00529 977 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Chy01g00529 977 Gene3D PAS domain 601 744 - -
Chy01g00529 977 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Chy01g00529 977 Gene3D PAS domain 759 870 - -
Chy01g00529 977 Gene3D PAS domain 74 322 - -
Chy01g00529 977 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Chy01g00529 977 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 959 - -
Chy01g00529 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Chy01g00529 977 Gene3D - 403 576 IPR043150 -
Chy01g00529 977 CDD PAS 757 867 IPR000014 -
Chy01g00529 977 SMART gaf_1 219 408 IPR003018 GO:0005515
Chy01g00529 977 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Chy01g00529 977 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Chy01g00529 977 TIGRFAM sensory_box: PAS domain S-box protein 620 734 IPR000014 -
Chy01g00529 977 TIGRFAM sensory_box: PAS domain S-box protein 760 866 IPR000014 -
Chy01g00529 977 SUPERFAMILY GAF domain-like 199 395 - -
Chy01g00529 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Chy01g00529 977 SMART pas_2 745 815 IPR000014 -
Chy01g00529 977 SMART pas_2 615 681 IPR000014 -
Chy01g00529 977 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Chy01g00529 977 SUPERFAMILY GAF domain-like 406 586 - -
Chy01g00529 977 Gene3D - 200 559 IPR029016 -
Chy01g00529 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 733 IPR035965 -
Chy01g00529 977 Pfam GAF domain 220 398 IPR003018 GO:0005515
Chy01g00529 977 CDD PAS 624 730 IPR000014 -
Chy01g00529 977 Pfam PAS fold 71 186 IPR013654 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00529 - - - csv:101211915 1847.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00529 Chy-Chr1:3758734 Chy03g00986 Chy-Chr3:13388886 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g703 Blo02g00140 Blo15g00444 . . . . . . . Cmo19g00869 . . . . Sed05g2128 Cpe15g00685 . Bhi05g01475 Tan02g0490 Cmetu01g1663 Lac12g0396 . . . Cla02g00291 Cam02g0302 Cec02g0302 Cco02g0306 Clacu02g0294 Cmu02g0290 Cre02g0625 . . Cone8ag1368 Cone12ag1314 . Csa07g00253 . Cme01g00552 . . . . . . . . . . . . Cma19g00854 . Car19g00664 . . . . . . . . . . . . . . . . Lsi11g01345 . Chy01g00529 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g02240 . 5 1196 Histidine Kinase Gene Family AT2G17820 65.3 0.0e+00 1457.2
Chy10g00085 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1350.9
Chy11g01787 . 58 1002 Histidine Kinase Gene Family AT2G01830 53.3 2.9e-274 941.8
Chy11g00704 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.1 2.2e-269 925.6
Chy07g00300 . 1 995 Histidine Kinase Gene Family AT5G10720 57.3 3.3e-290 994.6
Chy03g00986 . 35 1154 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1822.4
Chy03g00990 . 3 1144 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1617.4
Chy06g00756 . 34 1121 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1192.9
Chy01g00529 . 18 952 Histidine Kinase Gene Family AT1G09570 57.0 0.0e+00 1082.8
Chy06g00756 . 13 1062 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1665.6
Chy12g00013 . 21 1043 Histidine Kinase Gene Family AT2G18790 59.6 0.0e+00 1239.9
Chy03g00986 . 55 1088 Histidine Kinase Gene Family AT2G18790 53.2 0.0e+00 1085.9
Chy03g00990 . 22 1077 Histidine Kinase Gene Family AT2G18790 50.9 1.8e-306 1048.9
Chy01g00529 . 26 952 Histidine Kinase Gene Family AT2G18790 56.0 8.2e-299 1023.5
Chy01g00529 . 18 954 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1223.8
Chy06g00756 . 21 1123 Histidine Kinase Gene Family AT5G35840 53.1 0.0e+00 1150.2
Chy03g00986 . 43 1148 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1114.4
Chy01g00528 . 1 160 Histidine Kinase Gene Family AT5G35840 52.4 9.3e-37 152.9
Chy06g00756 . 3 1123 Histidine Kinase Gene Family AT4G16250 75.9 0.0e+00 1712.2
Chy12g00013 . 22 1105 Histidine Kinase Gene Family AT4G16250 57.7 0.0e+00 1283.5
Chy03g00986 . 42 1149 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1137.9
Chy01g00529 . 26 952 Histidine Kinase Gene Family AT4G16250 54.4 1.2e-292 1003.0
Chy12g00013 . 31 1119 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1375.5
Chy06g00756 . 38 1121 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1271.5
Chy01g00529 . 27 952 Histidine Kinase Gene Family AT4G18130 50.1 3.2e-255 878.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00529 Chy_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.11003 0.095958 0.0 0.0 0.0