Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00540 ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACAGCTCTATCTATTTCGATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCATCTGTAGTCCCATCAACAGATTCCTTTGAAAGTTCCTCAGAGTTGGGAGATCCCAATTTTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATATCCAAGGATTAGATTTGATAAAGTACAGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAATGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGAGAAATCTTGCTTTTGGTACAGCTATCACTATCAGATTTTGGCACTCCAGCAAGTTGGACATCCAACTTGA 516 43.02 MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSSELGDPNFGSSWNYLEMFRHRYPRIRFDKVQSSERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEEEKSCFWYSYHYQILALQQVGHPT* 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3866744 3868614 - Chy1G005400.1 Chy01g00540 217721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00540 171 SMART ring_2 99 140 IPR001841 -
Chy01g00540 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
Chy01g00540 171 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Chy01g00540 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 154 - -
Chy01g00540 171 SUPERFAMILY RING/U-box 91 146 - -
Chy01g00540 171 Pfam Ring finger domain 98 141 IPR001841 -
Chy01g00540 171 PANTHER - 1 154 IPR044249 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g00540 Chy11g00731 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00540 Chy-Chr1:3866744 Chy02g00696 Chy-Chr2:4207564 6.47E-14 dispersed
Chy01g00540 Chy-Chr1:3866744 Chy01g00541 Chy-Chr1:3880291 5.35E-64 tandem
Chy05g01298 Chy-Chr5:17214525 Chy01g00540 Chy-Chr1:3866744 7.47E-06 transposed
Chy01g00540 Chy-Chr1:3866744 Chy11g00731 Chy-Chr11:9777923 4.57E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00540 K16285 - csv:101215843 313.538