Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00545 ATGGGTTACATATGTGATTTCTGTGCGCAACAAAGGTCGATTGTGTATTGCCGATCTGATGCTGCAGCTTTGTGCTTATCTTGTGACCGAAATGTTCACTCTGCTAATGCCTTGTCAAGGCGCCACTCGAGAACATTGTTATGTGACCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGACAACCAATCAATTGTTACTCAGGCTGCCCGACGGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTTTAGATCTCCCTTCTGGAAGCGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCTGTAAATGCCTGGGGCCCAAATGATAAAGCTGGTCAAAATGTTTCTGGTGTAGATGAAACCAATGAGTTCTCAAGTGTGGATAAATCAATTTGGTATGGATCGTCTTCAATGCCTCACATTATGGACCAACCGATTACTATGGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAAATCGATATCGAAGATGATCTATACGAGAGTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTGTCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGCTTGTTCAGGATGAAAAACTTATCTGCCGCTAAATCTTGTTGCCCTGGTGGGGGTGCTGCAGAGGGGGCATCAGTCAGTTTTGTTAATAATGTAATGCAGCCTGCAAACAGTAATGCAGCATCGGCAGATTCCGTTATGAGTGCGAAGACTGAACCAGTTCTTTGTTATAACAATAAGCAAGAGCACTCCGGCCTATCGTTCTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCAAGACTGTGGAGCTTCATCAATGCTTCTAATGGGAGAACCGCCATGGTGTTCTATGGCCACTGAGACTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCTGATACTCGAAGACGTGTCAAGGGGCGCTTTGTCAAAGCCGGAGAAGCTTATGACTATGATCCATTGAGTCAAACCAGAAGCTACTAA 1224 43.63 MGYICDFCAQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLPSGSDACEQELGLMSIAENSAVNAWGPNDKAGQNVSGVDETNEFSSVDKSIWYGSSSMPHIMDQPITMDATSPKLHYPGTKGPEIDIEDDLYESLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRMKNLSAAKSCCPGGGAAEGASVSFVNNVMQPANSNAASADSVMSAKTEPVLCYNNKQEHSGLSFSGMTGESSAGEHQDCGASSMLLMGEPPWCSMATETSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3890907 3894366 - Chy1G005450.1 Chy01g00545 217726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00545 407 CDD Bbox1_BBX-like 4 47 - -
Chy01g00545 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 407 - -
Chy01g00545 407 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515
Chy01g00545 407 Pfam CCT motif 350 392 IPR010402 GO:0005515
Chy01g00545 407 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Chy01g00545 407 SMART bboxneu5 4 47 IPR000315 GO:0008270
Chy01g00545 407 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Chy01g00545 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 407 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g00545 Chy11g00733 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00545 Chy-Chr1:3890907 Chy07g01493 Chy-Chr7:19217216 2.24E-14 dispersed
Chy12g00984 Chy-Chr12:15115515 Chy01g00545 Chy-Chr1:3890907 3.63E-10 dispersed
Chy01g00545 Chy-Chr1:3890907 Chy11g00733 Chy-Chr11:9809676 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17279 PF06203 CCT 2.70E-16 CL0281 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00545 - - csv:101216326 809.675