Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00551 ATGGCCTCGAGTAGTAGCAAAGAACTTCTGTCTGGTTCTTCGGACAACAAAAACGCTAAATCTGAAACATCCTCTTCGGACAATCCTCCTCCACAGGCAGCATCTCAAAGAACTAATTCTCCTCCTCAGGCAGCACCCCAAAGAACTAATTCTATATTTGATGACCTGCCTCAGGACAATCCTTTTGATTTCTCATCCATGTCTGACATTCTTAATGATCCTAGCATCAAAGCATTAGCTGAACAGATAGCAAAAGATCCTTCATTCAACCAGATGGCTGAGCAGCTTCAACAATTTCAGAGTCCACCAGCTCAAGAAGGAATCCAGTTTGATCCTCAACAATACTTTTCTACCATGCAACAAGTCATGCAGAATCCTCATTTTATGTCTATGGCAGAGCGTCTTGGTAGCACACTAATGCAGGATCCATCTATGTCTCGCATGTTTGAGAGTTTTGCTAGTCCACCAGATGGTGATCAACTTGAGGAAAGAATGGCACAGATTAAAGAGGATCCTTCATTGAAGCCCATATTGGAAGAGATAGAGACTGGCGGTCTACCTTCCATGATGAAGTACTGGAATGATAAAGAAGTTTTACAGAAGTTGGGGAAAGCAATGGGCCTTCCAGTTTCAGCTGAGGCAGCGACGTCTACTGACAATGCTGGGGTTGATGATTCTGAAGAACCGGAGAATGAGGATGAATCAGCTGTTCATCATACTGCTAGTACTGGTGATGTTGAGGGATTAAAAAAGGCGCTTGCATCTGGTGCTGACAAGGATGAAGTTGATTCAGAAGGCAGGACGGCATTGCATTTTGCTAGTGGGTATGGTGAGGTTGAATGTGCTCAAGTCCTCCTTGAGGCTGGAGCGAAAGTGGATGCTTTGGACATGAATAAGAACACTGCCCTTCACTATGCAGCTGGTTATGGCCGAAAGGACTGTGTCGCCCTTCTCCTGGAAAACGGCGCTGCTGTTACTCTCACAAACATGGATGGAAAGACTCCCATTGATGTTGCCAAGCTAAACAACCAGAATGAGGTGCTGAAGTTGCTTGAAAAGGATGCTTTCCTGTAA 1074 44.88 MASSSSKELLSGSSDNKNAKSETSSSDNPPPQAASQRTNSPPQAAPQRTNSIFDDLPQDNPFDFSSMSDILNDPSIKALAEQIAKDPSFNQMAEQLQQFQSPPAQEGIQFDPQQYFSTMQQVMQNPHFMSMAERLGSTLMQDPSMSRMFESFASPPDGDQLEERMAQIKEDPSLKPILEEIETGGLPSMMKYWNDKEVLQKLGKAMGLPVSAEAATSTDNAGVDDSEEPENEDESAVHHTASTGDVEGLKKALASGADKDEVDSEGRTALHFASGYGEVECAQVLLEAGAKVDALDMNKNTALHYAAGYGRKDCVALLLENGAAVTLTNMDGKTPIDVAKLNNQNEVLKLLEKDAFL* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3948107 3951241 + Chy1G005510.1 Chy01g00551 217732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00551 357 PANTHER - 25 357 - -
Chy01g00551 357 ProSiteProfiles Ankyrin repeat region circular profile. 298 329 - -
Chy01g00551 357 ProSiteProfiles Ankyrin repeat profile. 265 297 IPR002110 GO:0005515
Chy01g00551 357 Pfam Ankyrin repeats (many copies) 285 339 IPR002110 GO:0005515
Chy01g00551 357 Pfam STI1 domain 164 207 IPR041243 -
Chy01g00551 357 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 25 357 - -
Chy01g00551 357 MobiDBLite consensus disorder prediction 1 70 - -
Chy01g00551 357 Gene3D - 225 302 IPR036770 -
Chy01g00551 357 SUPERFAMILY Ankyrin repeat 225 352 IPR036770 -
Chy01g00551 357 MobiDBLite consensus disorder prediction 214 247 - -
Chy01g00551 357 Gene3D - 303 354 IPR036770 -
Chy01g00551 357 ProSiteProfiles Ankyrin repeat region circular profile. 265 296 - -
Chy01g00551 357 ProSiteProfiles Ankyrin repeat profile. 298 330 IPR002110 GO:0005515
Chy01g00551 357 SMART ANK_2a 232 261 IPR002110 GO:0005515
Chy01g00551 357 SMART ANK_2a 298 327 IPR002110 GO:0005515
Chy01g00551 357 SMART ANK_2a 265 294 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00551 - - - csv:101216809 690.649
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00551 Chy-Chr1:3948107 Chy01g01614 Chy-Chr1:22041615 7.88E-10 dispersed
Chy06g00467 Chy-Chr6:3125182 Chy01g00551 Chy-Chr1:3948107 1.16E-11 dispersed
Chy01g00254 Chy-Chr1:1748855 Chy01g00551 Chy-Chr1:3948107 7.30E-06 transposed
Chy01g00641 Chy-Chr1:4522853 Chy01g00551 Chy-Chr1:3948107 7.16E-15 transposed
Chy09g01445 Chy-Chr9:15998482 Chy01g00551 Chy-Chr1:3948107 4.63E-14 transposed
Chy11g01557 Chy-Chr11:22122448 Chy01g00551 Chy-Chr1:3948107 5.59E-07 transposed
Chy11g01789 Chy-Chr11:24244590 Chy01g00551 Chy-Chr1:3948107 8.18E-07 transposed
Chy01g00551 Chy-Chr1:3948107 Chy11g00741 Chy-Chr11:10086977 6.23E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002762 0 3 2 2 2 2 2 1 1 1 2 1 1 2 2 1 1 3 2 1 2 2 2 2 2 2 2 7 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00551 Chy_Chr01 FPKM 5.723547 6.315613 6.295762 6.81295 7.391255 5.324447 8.02023 5.570376 5.34157 6.395673