Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00553 ATGTCATCTGAAGACTCTTCATGGGGTCTGGAATTCGCCATGGCCATTGCCATATCACAATTCTACGGCCCTGTTTCACTTTCATCCGGTTTTCTTTGGAGCAGATATTTCTGTTCATCAATCAAAAAGATGAACCGGACAAATTTCATACTTACGTTCTGTACATATGCAAGAGAGGAAGATCAGAAAATGGACGACAAGAGAGAAATCGAAGAGCCACCAAGTTGCAAATTCTCATATTCTGCTCATCAAATCAACCCTACAGAGAAGAGGACACCAATTGAAGTCTTTCAAGTGCCTGCAAGTTCTGGAGATCGCCACTCCAAGGGTGAAGCCACTCATGAGCCAGATGAGCCAAAATCATCCCTCTCTTCCTTTCGTCATGCTGCCAGCATGGAAGCATCCACAAAGTGGATGGCATTTGAAAGTGAAAACTTTGATATAACAAAGACATACACAAAGAACTTCGGTGGTAGCTTTAGGTCATATTCTACTAAACTATTGGAAACAAACACAACAAAAAGGACTGCTGAGGAGAACAAGATTGATCGTTTAGCATCGCTGCAACTGACGTATGTTATCTCAGATGCAACAAAACCAGATTACCCTATCATGTTTGCCAGCAATAGGTTCTTGTCTATGACTGGATATACATTGGAGGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCGGAGACAGATAAGAATGAAGTAGCTAAAATACGACATGCAATTAGAAAGGGGAATAGCTACTGTGGCAAGCTCTTAAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAAGACTCCCATGGCAGAATCATCAGATTTATTGGAATGCAGGTTGAGATCGCCAAAGACACAGAAGGAAAAGAGAAAACTGTGAGGTCCATGTCCATTACAGAGGTTCAAGCTGAGAGGGCAATTAGGTCCATTGTGGAGGTCGACATTGTGAAAAGTCTTGGATCTCACTGGCATGATGCTGATACAAAGCACCAAGAGCCAGAAAAGACTAATGTTGATTATGCTTCATCCAAGGCTCTGGATAAGAATTTTAGCACAGCTGATAACCAAAAGGCTCGGTTCAAAGAAAGGACCTTAGGTTCTGCAGTAGAAGGTGAAGAAAAGACAGTAGTTGAGACATATTTATTCAAGCCTAGGGATGGTGATCATGTTGCTAAAAGAGAAAGGGACATACGCCAAGGAACTGAGCTGGCTACTACATTGGAACGGATCGAGAAGATATTTTTTATCACTAATCCAAGACTTCCTGATAATCCTATTATATTTGCATCTCATAGGTTTCTTGATTCCACAGAATACATGCTTGAAGAAGTTCTGGGGAGAAACTTTTGTTTTCTTCAGGGACCTGAAACAGATCAAGCAACTGTCTCAAAGATAAACGATGCAATTGAAGAGCAGAGAGAAATCACTCTTCAGATAATCAACTACACAAAGAGTGGAAAAACGTTCTCTAATTTATTTCACTTGCAACCCATGTGTGATCAAATGAAGGGTGAGCTTCAATATTTCATTGGTGTGCAAATTCATCAAAAACCTTCAAGAAACCGGCTTTTAGATCGGACAGAGCATGAAAATGCAAAGCTGGCCAAAGCTGTAGCCGAAAATGTTGTCAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAACGAACTTCTGGACAATCTACTGTCAGCCGGTCTTGCCAAGGCCTCACAAGAAGTACAGCCCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAATGTTGGACTCCATCATTTCAAGCCAATAAAACCTCTGGGTTTTGGAGACATTGGCAGTGTTCATTTGGTAGAACTGAAAGGAACAGGTGAACTCTTTGCTATGAAGGCTATAGAGAAGTCGGTAATATTAAATCGCAACAAGGTTCACCGAGCATGCATGGAAAGGGAAATCATGTCACTTTTGGATCATCCTTTCATGCCAACTCTATACTCTTCATTTCAGACGTCTACACACATTTTTCTGATTATGGACTTCTGTCCCGGTGGAGAGTTATTTACCTTTCTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGAAGCTGCTAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAGTACCTTCACTGTTTAGGTATTATCTACAGGGACCTAAAACCTGAAAACATTCTACTTCAGAAAGACGGACATATCATTCTCGCCGATTTTGATTTATCGTTTAAGACGTCTAACATACAAACCATAGAATCTTCACCCCCAAGAAAGAAGACACGTAGGCACAAATCATTGCCGACGTTCGTCGTTGAACCTATGGTGGAACTGAATTCATTCGTTGGAACTGAAGAGTACATTGCCCCAGAGATCATAATGGGTGCAGGCCATAGTAGTTCTATTGACTGGTGGACTCTTGGTATCTTATTGTATGAAATGCTCTATGGTCGCACACCCTTCAAAGGCAAAAACAGGAATAAAACTTTTGCCAATATTTTGTTCAAGGACTTGACCTTCCCCATTAGTATTCAGGTAAGTCTTGCAGCAAAACAACTGATTGATGCACTACTACAAAGAGACCCGGCACGTCGTCTAGGATCAAGGACTGGTTCCGATGAAATCAAACGACATCCATTTTTCCGTCAAGTAAATTGGCCTAAAATTCGAACCATGACACCACCATCACCAGAAGTAGCCCTTCAAATAATTGAGAGAGACCCAAAAGCCAATGATTTGAAGTGGGAAGATGGAATGCTCAGCCATACAATGGGTTCTGCTAATATTTTCTGA 2829 41.6 MSSEDSSWGLEFAMAIAISQFYGPVSLSSGFLWSRYFCSSIKKMNRTNFILTFCTYAREEDQKMDDKREIEEPPSCKFSYSAHQINPTEKRTPIEVFQVPASSGDRHSKGEATHEPDEPKSSLSSFRHAASMEASTKWMAFESENFDITKTYTKNFGGSFRSYSTKLLETNTTKRTAEENKIDRLASLQLTYVISDATKPDYPIMFASNRFLSMTGYTLEEVIGRNCRFLQGPETDKNEVAKIRHAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGRIIRFIGMQVEIAKDTEGKEKTVRSMSITEVQAERAIRSIVEVDIVKSLGSHWHDADTKHQEPEKTNVDYASSKALDKNFSTADNQKARFKERTLGSAVEGEEKTVVETYLFKPRDGDHVAKRERDIRQGTELATTLERIEKIFFITNPRLPDNPIIFASHRFLDSTEYMLEEVLGRNFCFLQGPETDQATVSKINDAIEEQREITLQIINYTKSGKTFSNLFHLQPMCDQMKGELQYFIGVQIHQKPSRNRLLDRTEHENAKLAKAVAENVVKAVRELPDANLKPTNFWTIYCQPVLPRPHKKYSPSWIAIQKITSHGENVGLHHFKPIKPLGFGDIGSVHLVELKGTGELFAMKAIEKSVILNRNKVHRACMEREIMSLLDHPFMPTLYSSFQTSTHIFLIMDFCPGGELFTFLDKQPMKMFKEEAARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIILADFDLSFKTSNIQTIESSPPRKKTRRHKSLPTFVVEPMVELNSFVGTEEYIAPEIIMGAGHSSSIDWWTLGILLYEMLYGRTPFKGKNRNKTFANILFKDLTFPISIQVSLAAKQLIDALLQRDPARRLGSRTGSDEIKRHPFFRQVNWPKIRTMTPPSPEVALQIIERDPKANDLKWEDGMLSHTMGSANIF* 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3963768 3975020 + Chy1G005530.1 Chy01g00553 217734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00553 942 SMART serkin_6 608 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00553 942 SUPERFAMILY PYP-like sensor domain (PAS domain) 425 524 IPR035965 -
Chy01g00553 942 ProSiteProfiles Protein kinase domain profile. 608 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00553 942 Gene3D Phosphorylase Kinase; domain 1 607 691 - -
Chy01g00553 942 Gene3D PAS domain 399 560 - -
Chy01g00553 942 ProSiteProfiles PAS repeat profile. 204 250 IPR000014 -
Chy01g00553 942 Pfam PAS domain 432 524 IPR000014 -
Chy01g00553 942 Pfam PAS domain 198 293 IPR000014 -
Chy01g00553 942 SUPERFAMILY PYP-like sensor domain (PAS domain) 198 291 IPR035965 -
Chy01g00553 942 TIGRFAM sensory_box: PAS domain S-box protein 204 295 IPR000014 -
Chy01g00553 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Chy01g00553 942 PANTHER FLIPPASE KINASE 1-RELATED 174 936 - -
Chy01g00553 942 CDD STKc_phototropin_like 606 907 - -
Chy01g00553 942 SMART pac_2 487 529 IPR001610 -
Chy01g00553 942 SMART pac_2 254 296 IPR001610 -
Chy01g00553 942 CDD PAS 204 293 IPR000014 -
Chy01g00553 942 SUPERFAMILY Protein kinase-like (PK-like) 586 920 IPR011009 -
Chy01g00553 942 PANTHER BNAC03G12530D PROTEIN 174 936 - -
Chy01g00553 942 Gene3D Transferase(Phosphotransferase) domain 1 692 907 - -
Chy01g00553 942 Gene3D PAS domain 192 349 - -
Chy01g00553 942 MobiDBLite consensus disorder prediction 101 126 - -
Chy01g00553 942 ProSiteProfiles PAC domain profile. 251 305 IPR000700 -
Chy01g00553 942 MobiDBLite consensus disorder prediction 107 122 - -
Chy01g00553 942 Pfam Protein kinase domain 610 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00553 Chy-Chr1:3963768 Chy11g01288 Chy-Chr11:19049688 6.32E-16 dispersed
Chy10g00974 Chy-Chr10:15229143 Chy01g00553 Chy-Chr1:3963768 8.12E-49 dispersed
Chy12g01587 Chy-Chr12:19391094 Chy01g00553 Chy-Chr1:3963768 2.07E-60 dispersed
Chy02g02540 Chy-Chr2:28692266 Chy01g00553 Chy-Chr1:3963768 1.66E-64 transposed
Chy06g00651 Chy-Chr6:4451975 Chy01g00553 Chy-Chr1:3963768 3.23E-37 transposed
Chy10g01269 Chy-Chr10:17226124 Chy01g00553 Chy-Chr1:3963768 5.27E-56 transposed
Chy01g00553 Chy-Chr1:3963768 Chy11g00746 Chy-Chr11:10264225 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70975 PF00069 Pkinase 2.10E-63 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00553 K20715 - csv:101213364 1736.47