Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00556 ATGGAAAGTAGCGCCAGTCGAAATGGTAATTGTATGCTGTGGTTCTTCAGGGATAAAGGTTTTGATGATAGAAGTATTGATACGATGTTTAGAAAGTGTAGGCGTTTAGAAGATATGCAGAATGAAAGAGCTTCTGAAAACTGGGAATATTTGGAAAGAATTGGGATTCAAAAGAGGAAACTCCCTTCTGTTGTTTCCAAATGCCCTAAGATTTTAGCTCTTGGTCTTCAAGAGAAACTCGTTCCCATGGTTGAGTGCCTTGCAACACTCAGCACCAAGCCTCATGAAATTGCTGCAGCTATTGCTAAATTTCCTGGTATTCTTTCCTATAGTGTTGAAGAGAAGCTATGCCCACTTTTGGCGTTCTTTCAAGCATTAGGTGTCCCTGAAAAGCAACTTGGAAAGATGATTCTACTCAACCCGAGGCTTATTAGTTACGGCATTGAATCGAAACTCGTTGAAACTGTAGATTTTCTTGCTGGGGTTGGGCTAACGAAGGAGGGGGTAATTGGAAAAGTTCTTGCAAAAAATCCATTTCTCATGGGTTATAGTGTTGATAAAAGGCTCCGCCCGACTGTGGAGTTTCTGAAATCAATCGGTCTAAACAAGATGGATCTTCAAGCAGTTGCATTGAAATTTCCGGACATTTTGTGTAGGGACGTGGACAAAGTTTTGAGATGTAATTTAGATTATCTAAGGAGCCGTGGGTTTAAAGATGGAGAAATAGTGTCTTTGGTGACTGGTTATCCTCCTGTTTTGATCAAGAGCATTCAACATTCTTTAGAACCTCGGATCAGATTTTTGGTCGAAATAATGGGAAGAAAACTTGAGGAAGTTGCTGAATATCCTGACTTTTTTAAGCATGGTTTGAAGAAAAAACTTGAGCTGCGGCATAGATTGTTGAAAGAGAAGAATGTTGACTTTGCCTTGAGTGAATTGTTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGGGTTTGTTATGA 987 39.41 MESSASRNGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERIGIQKRKLPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFLMGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDGEIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRLLKEKNVDFALSELLECNQKKFMMKMGLL* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3990049 3991035 + Chy1G005560.1 Chy01g00556 217737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00556 328 Pfam mTERF 12 169 IPR003690 GO:0003690|GO:0006355
Chy01g00556 328 Pfam mTERF 115 321 IPR003690 GO:0003690|GO:0006355
Chy01g00556 328 PANTHER CGI-12 PROTEIN-RELATED 11 327 IPR003690 GO:0003690|GO:0006355
Chy01g00556 328 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Chy01g00556 328 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Chy01g00556 328 SMART mt_12 171 202 IPR003690 GO:0003690|GO:0006355
Chy01g00556 328 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Chy01g00556 328 SMART mt_12 27 57 IPR003690 GO:0003690|GO:0006355
Chy01g00556 328 SMART mt_12 243 275 IPR003690 GO:0003690|GO:0006355
Chy01g00556 328 SMART mt_12 62 93 IPR003690 GO:0003690|GO:0006355
Chy01g00556 328 SMART mt_12 207 238 IPR003690 GO:0003690|GO:0006355
Chy01g00556 328 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL 11 327 - -
Chy01g00556 328 Gene3D Transcription termination factor 3, mitochondrial 95 326 IPR038538 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00556 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101218706 631.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00556 Chy-Chr1:3990049 Chy12g00316 Chy-Chr12:3405938 5.04E-08 dispersed
Chy01g00786 Chy-Chr1:6311761 Chy01g00556 Chy-Chr1:3990049 3.74E-20 transposed
Chy01g01098 Chy-Chr1:12427651 Chy01g00556 Chy-Chr1:3990049 4.74E-24 transposed
Chy04g01396 Chy-Chr4:20566986 Chy01g00556 Chy-Chr1:3990049 6.98E-16 transposed
Chy09g00626 Chy-Chr9:7834445 Chy01g00556 Chy-Chr1:3990049 4.41E-16 transposed
Chy11g00750 Chy-Chr11:10284699 Chy01g00556 Chy-Chr1:3990049 6.14E-51 transposed
Chy01g00556 Chy-Chr1:3990049 Chy11g00749 Chy-Chr11:10280248 1.73E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g322 . . . . . . . . Cmo19g00843 . . . . . Sed05g2133 . Cpe15g00664 Bhi05g01534 Tan02g0531 Cmetu11g0650 Lac12g0430 Hepe02g0338 . . Cla02g00320 Cam02g0328 Cec02g0328 Cco02g0332 Clacu02g0318 Cmu02g0317 Cre02g0650 . . Cone3ag1260 Cone10ag1198 . Csa07g00224 . . . . . . . . . . . . . . Cma19g00826 . Car19g00641 . . . . . . . . . Cla02g01049 Cam02g1120 Cec02g1125 Cco02g1158 Clacu02g1106 Cmu02g1066 Cre02g1374 Lsi11g01318 . Chy01g00556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003040 0 1 1 1 1 2 1 3 2 3 2 2 1 1 1 1 2 2 1 2 2 1 2 2 3 1 2 2 3 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17281 PF02536 mTERF 7.10E-42 No_clan Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00556 Chy_Chr01 FPKM 686.72522 725.593567 371.104462 358.703278 612.607422 668.777222 570.017212 177.170898 175.52092 170.678467