Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00559 ATGGATAATGAGGTGATTGAATTTGATATTGGATTGGGAGGTGGGAGTGTGAGGGAGGGAGATGACTATTCTATGGGTATGGTACATCATTCCATTGAGGATGAGGAAATGGTTGATAGCCCTCCTCTCAGCAGTCTTGGTGGTGGTGCTGGCAGTGGTGAAATATATCTTCCTGAGGGTGATCTTTTGGATCTTGAACCTTATGAAAGAATGGAATTCGAGTCTGAAGAAGCTGCCAAGGCTTTCTACAATTCATATGCTCGACGTGTTGGGTTTAGTACTCGTGTCAGCTCCTCCCGTCGGTCTAGGCGTGATGGAGCGATTATACAAAGACAATTTGTTTGTGCCAAAGAGGGTTTTAGGAATTTGAATGAGAAACGAACTAAAGACAGAGAAATTAAGCGTCCTCGGACGATTACAAGAGTGGGTTGCAAAGCATCCTTGTCTGTAAAAATGCACGATTCTGGAAAATGGGTTGTCTCTGGATTTGTTAGAGGGCATAATCATGAGTTAGTTCCTCCTGATCAGGTGCACTGCTTGCGGTCTCATAGGCAAATATCAGGTCCAGCAAAGACCTTAATTGATACTTTACAGGCTGCTGGGATGGGTCCTCGTAGAATTATGTCAGCATTGATAAAGGAGTATGGAGGAATCAGTAAAGTTGGATTTACAGAGGTGGATTGTCGAAATTATATGAGGAATAATCGCCAAAGGAGCTTAGAAGGAGACATTCAACTGCTTTTGGATTACTTGAGGCAAATGCATTCTGAAAACCCTAACTTCTTCTATGCTGTGCAAGGTGAGGAGGATCAGTGCGTGGGAAATGTCTTTTGGGCTGACCCAAAAGCTCGGATGAACTATACTTATTTTGGTGATACTGTTACATTTGACACTACCTATAGGTCAAATAGATACCGTCTGCCCTTTGCTCCGTTTACTGGGGTGAATCACCATGGACAGCCTGTGTTATTTGGTTGTGCTTTTCTAATAAATGAATCTGAAGCATCGTTTAATTGGCTATTTAGAACATGGCTTTTGGCAATGTCTGGTCGTCCACCTGTGTCAATTACTACTGATCATGATTCAGTAATACAGTCAGCCATTACACAAGTTTTCCCTGAGACCCGTCACCGTTTCTGCAAATGGCATATTTTCAAGAAATGCCAGGAGATGCTGTCTCATGTGTTTCTTAAACACCCAAGCTTTGAAGCTGACTTCCACAAATGTGTAAACTTGACTGACTCTATCGAGGAATTTGAGTCCTGCTGGCTTTCACTTGTTGACAGATATGATCTCAGGGATCATGAATGGCTTCAGACAGTTTACTCTGCTCGGAGGCAGTGGGTTCCAGTGTATTTGCGGGACACGTTTTTTGCTGAAATGTCTATTACACAGCGAAGTGATAGCATGAATTCATATTTTGATGGGTATGTGAATGCTTCAACCAATTTGAGTCAGTTTTTTAAACTGTATGAAAAAGCCTTAGAGAGTCGGAATGAAAAAGAAGTGAAAGCAGATTATGATACAATGAACACTGCCCCTGTACTAAAGACACCATCTCCAATGGAAAAACAAGTTTCTGAGCTTTACACCAGGAAGCTATTCTCGAGGTTCCAAGAGGAGTTAGTTGGGACGTTAACTTTTATGGCATCAAAAGCTGATGATGATGGAGAAATTATAACATATCAAGTGGCCAAATATGGAGAGGATCATAAAGCACACTATGTGAAATTTAATGTTTTGGAGATGAGAGCAAGTTGTAGTTGCCAGATGTTTGAGTTCTCAGGTCTTCTGTGCAGACATATCTTGGCTGTCTTCAGAGTGACCAATATTCTTACACTTCCATCTTATTACATATTGAAACGATGGACAAGAAATGCAAAAAGTAATGTGGTATTGGAGGATCATGTGAATGATATCTACAACAACTATCTTGAATCTCATACTGTGAGATACAATACCTTACGCCATGAGGCTTTTAAATTTATAGAGGAAGGAGCAAAGAGTGTGGATATGTATAATGTGGTTAAAGATGCCCTTCAGGAGGCTGCTAAAAGGGTTGCTCATACGACAAGAAATGATGGCAAAAATTCTACAATGAATGGGCGAATTAAAGTGGACCCTGTAAATGTCAGAAGCTATTCGAATCATAGTAGTAGCAGGGATCATGATGAGAACTTGAGCAAAAATATGTCTGAGGATGAGTTGGACAAAAAGATCAATGAGCTTACCAATGAATTGGAGTGTGCAAATCGCAAGTGTGAAGTTTATCGGTCTAACCTTTTTTCAGTGCTGAAAGACATTGAGGACCACAAGTTGCAATTGTCTATTAAAGTGCAGAACATTAAAATTAGTATGAAAGACAGCATTTGA 2373 40.62 MDNEVIEFDIGLGGGSVREGDDYSMGMVHHSIEDEEMVDSPPLSSLGGGAGSGEIYLPEGDLLDLEPYERMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVRGHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHSENPNFFYAVQGEEDQCVGNVFWADPKARMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFNWLFRTWLLAMSGRPPVSITTDHDSVIQSAITQVFPETRHRFCKWHIFKKCQEMLSHVFLKHPSFEADFHKCVNLTDSIEEFESCWLSLVDRYDLRDHEWLQTVYSARRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLSQFFKLYEKALESRNEKEVKADYDTMNTAPVLKTPSPMEKQVSELYTRKLFSRFQEELVGTLTFMASKADDDGEIITYQVAKYGEDHKAHYVKFNVLEMRASCSCQMFEFSGLLCRHILAVFRVTNILTLPSYYILKRWTRNAKSNVVLEDHVNDIYNNYLESHTVRYNTLRHEAFKFIEEGAKSVDMYNVVKDALQEAAKRVAHTTRNDGKNSTMNGRIKVDPVNVRSYSNHSSSRDHDENLSKNMSEDELDKKINELTNELECANRKCEVYRSNLFSVLKDIEDHKLQLSIKVQNIKISMKDSI* 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4008984 4012204 - Chy1G005590.1 Chy01g00559 217740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00559 790 SMART 26again6 585 612 IPR006564 GO:0008270
Chy01g00559 790 MobiDBLite consensus disorder prediction 717 733 - -
Chy01g00559 790 MobiDBLite consensus disorder prediction 688 733 - -
Chy01g00559 790 ProSiteProfiles Zinc finger SWIM-type profile. 578 610 IPR007527 GO:0008270
Chy01g00559 790 Pfam MULE transposase domain 294 387 IPR018289 -
Chy01g00559 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 40 763 - -
Chy01g00559 790 Coils Coil 733 760 - -
Chy01g00559 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 763 IPR031052 GO:0006355
Chy01g00559 790 Pfam FAR1 DNA-binding domain 82 173 IPR004330 -
Chy01g00559 790 Pfam SWIM zinc finger 562 608 IPR007527 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00559 - - - csv:101218471 1555.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00559 Chy-Chr1:4008984 Chy07g01084 Chy-Chr7:15782899 1.77E-171 dispersed
Chy01g00526 Chy-Chr1:3748305 Chy01g00559 Chy-Chr1:4008984 7.92E-10 transposed
Chy01g01467 Chy-Chr1:20394229 Chy01g00559 Chy-Chr1:4008984 2.29E-29 transposed
Chy01g01505 Chy-Chr1:20734811 Chy01g00559 Chy-Chr1:4008984 1.16E-21 transposed
Chy02g00463 Chy-Chr2:2874799 Chy01g00559 Chy-Chr1:4008984 6.64E-69 transposed
Chy02g01369 Chy-Chr2:10242050 Chy01g00559 Chy-Chr1:4008984 0 transposed
Chy04g01750 Chy-Chr4:23863436 Chy01g00559 Chy-Chr1:4008984 8.35E-07 transposed
Chy06g00629 Chy-Chr6:4269965 Chy01g00559 Chy-Chr1:4008984 1.45E-15 transposed
Chy07g01417 Chy-Chr7:18706006 Chy01g00559 Chy-Chr1:4008984 1.24E-24 transposed
Chy07g01450 Chy-Chr7:18946692 Chy01g00559 Chy-Chr1:4008984 2.53E-22 transposed
Chy10g00176 Chy-Chr10:4261158 Chy01g00559 Chy-Chr1:4008984 3.99E-83 transposed
Chy10g00643 Chy-Chr10:12980761 Chy01g00559 Chy-Chr1:4008984 6.75E-102 transposed
Chy01g00559 Chy-Chr1:4008984 Chy11g00752 Chy-Chr11:10317491 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g319 . . . . . . . . Cmo19g00838 Cmo11g01806 . . . . Sed01g0791 . . Bhi05g01538 Tan02g0536 Cmetu02g1725 . Hepe02g0341 . . . . . . . . . . . . . . Csa07g00221 . . . . . . . . . . . . . Cma11g01315 Cma19g00822 . Car19g00638 . . . . . . . . . . . . . . . . . . Chy01g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17282 PF10551 MULE 4.50E-29 CL0219 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00559 Chy_Chr01 FPKM 364.851593 389.221405 421.734863 402.444733 188.821518 183.42131 186.369461 400.422607 407.345215 408.548431