Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00563 ATGTCCGATTTGAACTCCGCCGTCCACGGCGCCTCCTCCCGCAACGCCAATCAATTTCTCGGTTCAGACCTCCAACTTCAAAACTTCTCACAAACCCATCTTCCCAATCCCAATTCTGCCAATTCAGCCACTCCCACCACCGGCGGTTCAACCTCGCGCCGCCCTCGTGGCCGCCCAGCCGGCTCCAAGAACAAGCCAAAACCGCCGGTGATCGTAACACGTGACAGCCCCAACGCTCTGAGGTCGCACGTGCTAGAGGTCTCCCCAGGCTCCGATGTGGTTGAATCCATCTCCAGTTACGTCACCCGCCGCCGCCACGGCTTATGCATTCTCGGCGGCACTGGCGCCGTCACGAACGTCAACTTGCGTCAGCCGGTGTCTCCGTTTGGTTCTGTTATGACTCTTCATGGAACATTTGAGATTGTGTCTCTGACTGGTACGGCGTTGCCGCCTTCGGGTGCTGGAGGGCTAGCGATTTATTTGGCCGACGGGCAACGGCAAGGGCATGTCGTCGGAGGAAGCGTCGTCGGGCCATTGACGGCATCGAGTCCAGTTACACTGATGGTGGCATCGTTTACGAATGCTGTGTATGATCGGCTACCGGTGGAGGAGGCAGAGCCGCCGGTACAAGCTCACGCATCGGCGTCGCCATCTTCAGATATTACTGGTGGAGGTGGCCAGCTTGGGGGCATCGAAAGCTTCAACCTTCGTGACGATGGTTGCGGTTGGAACAACGACAATGCATCAAGACCTCCGATGACACTCTATACAAAAAACTGA 780 57.18 MSDLNSAVHGASSRNANQFLGSDLQLQNFSQTHLPNPNSANSATPTTGGSTSRRPRGRPAGSKNKPKPPVIVTRDSPNALRSHVLEVSPGSDVVESISSYVTRRRHGLCILGGTGAVTNVNLRQPVSPFGSVMTLHGTFEIVSLTGTALPPSGAGGLAIYLADGQRQGHVVGGSVVGPLTASSPVTLMVASFTNAVYDRLPVEEAEPPVQAHASASPSSDITGGGGQLGGIESFNLRDDGCGWNNDNASRPPMTLYTKN* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4028642 4030468 - Chy1G005630.1 Chy01g00563 217744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00563 259 MobiDBLite consensus disorder prediction 22 53 - -
Chy01g00563 259 CDD DUF296 81 167 IPR005175 -
Chy01g00563 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 10 233 IPR014476 GO:0003680
Chy01g00563 259 SUPERFAMILY AF0104/ALDC/Ptd012-like 77 208 - -
Chy01g00563 259 MobiDBLite consensus disorder prediction 207 229 - -
Chy01g00563 259 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 194 IPR005175 -
Chy01g00563 259 Gene3D - 80 214 - -
Chy01g00563 259 ProSiteProfiles PPC domain profile profile. 77 218 IPR005175 -
Chy01g00563 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 25 10 233 - -
Chy01g00563 259 MobiDBLite consensus disorder prediction 22 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00563 Chy-Chr1:4028642 Chy11g01989 Chy-Chr11:25805445 1.01E-54 dispersed
Chy01g00563 Chy-Chr1:4028642 Chy06g00280 Chy-Chr6:1884621 9.33E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00563 - - csv:101213839 433.721