Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00568 ATGGCTGGTTTTGTAGCTATGATAGTCTACTATTTGGTCCTTCTTCAAACTTTTAATATCTTTGCGGCTAAGGATGAAGAATGGAAATCTGCTACTGCAACATACTCCAAAGAAACAGATGGGTCAATTGTTACGGAAGGTGCTTGTGGTTACGGAGACCTACATAAGATAAGTTATGGAAAATACAGCGCTGGACTGAGTAGCATGTTGTTTAATAGAGGAAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGATCACATCTTGTGGTGCTTGCAAGGAAGCCCGACTGTCATTCTAACAGCCACCGACTTCTGTCCTCCTAATTACGGCTTGTCTTCCGACTATGGCGGGTGGTGTAATTTTCCCAAGGAGCACTTTGAGATGTCAGAGGCAGCATTTGCTGAAATAGCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGGTGGAATGAGATTCACAGTTAGTGGGAATTATCGATTCTTTCAAGTTCTGATTACAAATGTTGGAATGGATGGTGAATTAGTGGCAGTGAAAGTAAAAGGATCAAGAACAGGATGGATACCATTGGCAAGGAACTGGGGACAGAACTGGCAAAGCAATGTCAATCTTCACGGGCAACCCCTCTCTTTTGAAGTCACCTCCAGCAGTGGAAGAGCACTTACTTCCTACAGCGTTGCACCTGGAAACTGGCAGTATGGGCAGACATTTGAAGGGAAACAATTTTGA 759 43.61 MAGFVAMIVYYLVLLQTFNIFAAKDEEWKSATATYSKETDGSIVTEGACGYGDLHKISYGKYSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFAEIAEKKADIVPVQYRRVRCDRSGGMRFTVSGNYRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYSVAPGNWQYGQTFEGKQF* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4083549 4084866 - Chy1G005680.1 Chy01g00568 217749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00568 252 PANTHER EXPANSIN-A15 6 252 IPR002963 GO:0009664
Chy01g00568 252 SUPERFAMILY Barwin-like endoglucanases 27 178 IPR036908 -
Chy01g00568 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Chy01g00568 252 PANTHER EXPANSIN-A20 6 252 - -
Chy01g00568 252 Pfam Lytic transglycolase 64 150 IPR009009 -
Chy01g00568 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Chy01g00568 252 SMART dpbb_1 63 150 IPR007112 -
Chy01g00568 252 Gene3D - 14 156 IPR036908 -
Chy01g00568 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Chy01g00568 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Chy01g00568 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Chy01g00568 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Chy01g00568 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Chy01g00568 252 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Chy01g00568 252 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Chy01g00568 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Chy01g00568 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Chy01g00568 252 Gene3D - 160 250 IPR036749 -
Chy01g00568 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Chy01g00568 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Chy01g00568 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Chy01g00568 252 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Chy01g00568 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Chy01g00568 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Chy01g00568 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 160 IPR007112 -
Chy01g00568 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00568 Chy-Chr1:4083549 Chy12g00201 Chy-Chr12:2415956 1.39E-90 dispersed
Chy01g00568 Chy-Chr1:4083549 Chy11g01222 Chy-Chr11:18396907 1.93E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00568 - - csv:101213241 523.087