Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00573 ATGGCTTTCTCTATCTTCTCCAAAGCAACCCTCATCCTCTCTGCCACTTTATTCATCACTTACGCTATCGCTCATGATTTTTCAATCGTAGGCTATTCCCCCGAGCACTTAGCCTCCATAGATAAAACCATCGAGCTGTTCGAGTCGTGGATGTCAAAGCACAGTAAAAAGTATCGGAGTATTGAAGAGAAACTCCATAGATTTGAGATATTCCTTGATAATTTGAAGCACATTGATGAAACAAACAAGAAGGTTTCTAGCTATTGGCTGGGGTTGAATGAATTTGCAGACCTGAGCCATGAAGAGTTTAAGAGTAAATATTTGGGATTGAGAGTTGAGTTTCCAAGGAAACGATCGTCTCGTGGGTTTAGCTATGGAGATGTGGAGGACTTGCCCGAGTCGGTTGATTGGAGAACTAAAGGAGCTGTTACTCCTGTCAAGAACCAAGGCTCTTGCGGGAGTTGCTGGGCATTTTCAACTGTGGCGGCTGTGGAGGGGATAAACCAAATTGTCACTGGAAATCTAACCTCCTTGTCCGAACAAGAATTGATCGACTGTGACCGAAGCTTCAACAACGGGTGCTATGGTGGTTTGATGGATTACGCCTTCCAATACATAATGTCGAATTCCGGACTTCGAAAGGAAGAGGACTACCCATATCTAATGGAGGAAGGAAGATGCATCAGAGAAAAGGAACAATTTGAGGTAGTAACCATTAGCGGTTACGAAGATGTGCCAGCAAACGATGAACAGAGTCTCCTAAAAGCATTGAGTCACCAACCTGTCAGTGTAGCCATTGAAGCTTCTGGTAGAAATTTCCAATTCTACAAAGGGGGAATATTTACAGGCCGTTGTGGAACCCAGATGGATCACGGCGTGACAGCCGTTGGGTATGGTTCATCAGAGGGAACAGACTACATTATAGTAAAGAACTCATGGGGACCAAAATGGGGAGAAAATGGATATATTAGGATGAAGAGAAATACGGGAAAACCTGAAGGACTATGTGGAATCAACCAAATGGCTTCTTATCCGACCAAAGAGAAATAA 1050 43.62 MAFSIFSKATLILSATLFITYAIAHDFSIVGYSPEHLASIDKTIELFESWMSKHSKKYRSIEEKLHRFEIFLDNLKHIDETNKKVSSYWLGLNEFADLSHEEFKSKYLGLRVEFPRKRSSRGFSYGDVEDLPESVDWRTKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDRSFNNGCYGGLMDYAFQYIMSNSGLRKEEDYPYLMEEGRCIREKEQFEVVTISGYEDVPANDEQSLLKALSHQPVSVAIEASGRNFQFYKGGIFTGRCGTQMDHGVTAVGYGSSEGTDYIIVKNSWGPKWGENGYIRMKRNTGKPEGLCGINQMASYPTKEK* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4108440 4109796 - Chy1G005730.1 Chy01g00573 217754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00573 349 Pfam Papain family cysteine protease 131 346 IPR000668 GO:0006508|GO:0008234
Chy01g00573 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 289 299 IPR025660 -
Chy01g00573 349 Gene3D Cysteine proteinases 26 348 - -
Chy01g00573 349 CDD Peptidase_C1A 132 345 IPR039417 -
Chy01g00573 349 PANTHER CYSTEINE PROTEASE XCP1-LIKE 24 347 - -
Chy01g00573 349 SUPERFAMILY Cysteine proteinases 42 346 IPR038765 -
Chy01g00573 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 306 325 IPR025661 -
Chy01g00573 349 Pfam Cathepsin propeptide inhibitor domain (I29) 47 103 IPR013201 -
Chy01g00573 349 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 347 - -
Chy01g00573 349 SMART Inhibitor_I29_2 47 103 IPR013201 -
Chy01g00573 349 PRINTS Papain cysteine protease (C1) family signature 291 301 IPR000668 GO:0006508|GO:0008234
Chy01g00573 349 PRINTS Papain cysteine protease (C1) family signature 306 312 IPR000668 GO:0006508|GO:0008234
Chy01g00573 349 PRINTS Papain cysteine protease (C1) family signature 149 164 IPR000668 GO:0006508|GO:0008234
Chy01g00573 349 SMART pept_c1 131 346 IPR000668 GO:0006508|GO:0008234
Chy01g00573 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 149 160 IPR000169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00573 K16290 XCP; xylem cysteine proteinase [EC:3.4.22.-] - csv:101206340 705.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00079 Chy-Chr1:528991 Chy01g00573 Chy-Chr1:4108440 8.28E-27 dispersed
Chy01g00573 Chy-Chr1:4108440 Chy02g00894 Chy-Chr2:5765745 4.97E-134 dispersed
Chy10g01298 Chy-Chr10:17439656 Chy01g00573 Chy-Chr1:4108440 1.68E-69 dispersed
Chy11g01473 Chy-Chr11:21500765 Chy01g00573 Chy-Chr1:4108440 1.30E-09 dispersed
Chy11g00131 Chy-Chr11:1418184 Chy01g00573 Chy-Chr1:4108440 1.84E-117 transposed
Chy01g00573 Chy-Chr1:4108440 Chy07g00420 Chy-Chr7:3276610 1.34E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g306 . . . . . . . . . Cmo11g01798 . . . . Sed05g2142 Cpe04g00640 . Bhi05g01552 Tan02g0549 Cmetu01g0266 Lac12g0456 Hepe02g0352 . . Cla02g00332 Cam02g0341 Cec02g0342 Cco02g0346 Clacu02g0332 Cmu02g0330 Cre02g0662 Cone12ag1288 Cone8ag1342 . Cone10ag1012 . Csa07g00207 . . Blo04g00610 Blo13g00466 . Bda14g00652 Bpe15g00777 . . . . . . Cma11g01323 . Car11g01424 . . . . . . . . . . . . . . . . . Lsi11g01302 . Chy01g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00573 Chy_Chr01 FPKM 5.449383 5.889975 1.702062 1.813434 19.945436 16.873213 15.665319 0.725768 1.209287 0.395404