Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00595 ATGGGGATTTGTTGGGGTTCTCCAGTTGATAATCATACTCCTAGTTCCACTGGACATCTCAGTTCAGTTATATCCCAGACAACCAGTCAGACAACATCATCGACTATCAGCAACATCTCCAAGAACAGTCAATTCTCTGCAGCAAGTGGAGATGAAGTTTTTCCACATGGACAGATTCTGCCCTCTTCAAACTTGAGGGAGTATAGCTTGGCAGAGCTCAAAGCTGCAACCAAAAACTTCAGAGCTGAAGCATTGCTTGGTGAAGGAGGTTTTGGCAAGGTTTACAAAGGATGGCTCGAGGAGAGGGGCCTTGGAAGGAAGGGAAATTCGATGGTTATTGCAGTAAAAAAGTTGAAATCTGACAGTGTGCAAGGAATTGAGGAGTGGCAGTCAGAAGTGGGCTTCTTGGGAAGACTTTCTCACCCAAATCTAGTGAAACTGTTGGGTTATTGTTGGGAGGATCACGAGTTACTCCTTACTTATGAGTTCATGCAAAAAGGAAGCTTGGAGAACCATCTATTTGGAAGAGGATCGGCAGTTACGCCACTCGGATGGGATACTCGGCTTAAGATCGCTATAGGTGCTGCTCGAGGGCTAGCGTTCTTGCACACATCAGACAAGCAAGTAATTTATAGAGATTTCAAGGCTTCTAATATTCTGCTTGATGGGGAGTCAATTTTAATTCCAAAACTGGAGCTTATATCTCCAAGCAATTTTCAAGTTGAAATTAATGATGATATTTATGACACAGGACATCTGTATGTCAAGAGCGATGTATATGGTTTTGGAGTCGTATTGATTGAAATGTTGACTGGTTTACGTGCTCTCGACGAAAATCGTCCAACTGGGCAAGAAAACCTCACGGAGTGGATAAAACCATTCTTATCAGAGAGAAGGAAGCTGAAAAACGTGATGGACTTCCGGTTGGAAGGAAAATATCCATCCAGATCTGCATTCCAAGTGGCTCAGCTAGCTCTACAATGTATTGAGCAAGAGCAGAAAAACCGACCATCAATGAAAGAGGTCGTCGAGACATTGGAACAAATCGAAACTGTGAACGAGAAACAGATCGAGACTGGTAACCGTGCTTCCCATCTGGCATCAAATCGCAATGCTCATCAGCCACTTCACCATAATTCTCCACTTCACATGAAGCAATATGGAGGCCATGCTAATCAAACACCACCCAGATGCCGATAG 1200 43.75 MGICWGSPVDNHTPSSTGHLSSVISQTTSQTTSSTISNISKNSQFSAASGDEVFPHGQILPSSNLREYSLAELKAATKNFRAEALLGEGGFGKVYKGWLEERGLGRKGNSMVIAVKKLKSDSVQGIEEWQSEVGFLGRLSHPNLVKLLGYCWEDHELLLTYEFMQKGSLENHLFGRGSAVTPLGWDTRLKIAIGAARGLAFLHTSDKQVIYRDFKASNILLDGESILIPKLELISPSNFQVEINDDIYDTGHLYVKSDVYGFGVVLIEMLTGLRALDENRPTGQENLTEWIKPFLSERRKLKNVMDFRLEGKYPSRSAFQVAQLALQCIEQEQKNRPSMKEVVETLEQIETVNEKQIETGNRASHLASNRNAHQPLHHNSPLHMKQYGGHANQTPPRCR* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4266202 4269522 + Chy1G005950.1 Chy01g00595 217776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00595 399 PANTHER BNAA09G08980D PROTEIN 11 223 - -
Chy01g00595 399 Gene3D Transferase(Phosphotransferase) domain 1 164 243 - -
Chy01g00595 399 MobiDBLite consensus disorder prediction 9 26 - -
Chy01g00595 399 Gene3D Transferase(Phosphotransferase) domain 1 244 352 - -
Chy01g00595 399 MobiDBLite consensus disorder prediction 372 399 - -
Chy01g00595 399 ProSiteProfiles Protein kinase domain profile. 80 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy01g00595 399 MobiDBLite consensus disorder prediction 1 26 - -
Chy01g00595 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Chy01g00595 399 ProSitePatterns Protein kinases ATP-binding region signature. 86 117 IPR017441 GO:0005524
Chy01g00595 399 Gene3D Phosphorylase Kinase; domain 1 64 163 - -
Chy01g00595 399 Pfam Protein tyrosine and serine/threonine kinase 83 225 IPR001245 GO:0004672|GO:0006468
Chy01g00595 399 Pfam Protein tyrosine and serine/threonine kinase 250 346 IPR001245 GO:0004672|GO:0006468
Chy01g00595 399 PANTHER BNAA09G08980D PROTEIN 249 360 - -
Chy01g00595 399 SUPERFAMILY Protein kinase-like (PK-like) 60 349 IPR011009 -
Chy01g00595 399 PANTHER OS01G0588500 PROTEIN-RELATED 249 360 - -
Chy01g00595 399 PANTHER OS01G0588500 PROTEIN-RELATED 11 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00595 - - - csv:101210490 705.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00595 Chy-Chr1:4266202 Chy06g02283 Chy-Chr6:26752746 9.22E-138 dispersed
Chy01g00595 Chy-Chr1:4266202 Chy08g00749 Chy-Chr8:15218129 1.73E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g292 . . . . . . . . . Cmo11g01785 . . . . . Cpe04g00630 . Bhi05g01584 . . . . . . Cla02g00348 . . . . . . Cone12ag1276 Cone8ag1330 Cone3ag1248 . . Csa07g00185 . Cme01g01148 . Blo13g00474 . . . . . Bma08g00718 . . . Cma11g01334 Cma19g00797 Car11g01412 . . . . . . . . . . . . . . . . . Lsi11g01284 . Chy01g00595 Cme11g01308
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004416 1 3 2 1 1 0 2 0 0 1 1 0 2 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70978 PF07714 PK_Tyr_Ser-Thr 1.00E-24 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00595 Chy_Chr01 FPKM 16.440382 16.526794 26.495489 27.832577 14.122277 13.951099 14.24538 2.985279 3.194425 3.13136