Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00600 ATGAATCCGCACTTCAACTCCCTCTCCATCACCACTACTACCAGCTCTCCTATCGACCTCACCATTATTCCTTTCCAACCTTCTTCTACCTCCTCTTTCGACGACTCATCCTTATCCAACCCCCGTCGTCCTCGCAAGAAACGCTCAAGAACCCAAACCCACGACCCCCACCACTACTCCACACTCCTCACCACCACTTCTAAACCTAAGTACACCAAGAAACCCGATCCTAATGCACCCAAGATCACTCGTCCATGTACTGAGTGCGGGAAGAAGTTTTGGTCCGATAAAGCGCTTTTCGGTCACATGAGGTGTCATCCTGAACGTCAATGGCGTGGGATTATTCCCCCCATTAATTACCGTCGTCCCGTTTCGGTTTCTCCTAATTTTAGCCCTAATGTCGAACGCTCTTCTAGTTCCTTTACTGAAGAAGATCAAGACATTGCTAATTCTTTATTAATGCTTGCCAATGGCCCTAATTTCTCCATTTCTAGGGTTTCTGACTCTCGGTTTGAATGTTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCACTTGGAGGGCATAGAGCAAGTCATAAGAATGTAAGAGGCTGTTTTGCTATGGCAAGGAGCGATGAAGAAGAAACAGAAGATGAAATTACTCTCTTTGGGGATTTTGGACGCCATGAAAGGAGTTTCAATCTGGAGAATGAAATGTCGATGATGATTTTAGGAACAGAAAACCATAAGAAGAGATTCCAATGGGAGAATAATGCAGCTACTGATCAGGAGAGACTTGTTAATTTGGATTTAAACTTGCCTGCTCCTCTTGAAGATGATTCTTCTTCTTCATATTCTTCAAGCCTCACTCTGGATCTCAGGTTGGGTCTTTGA 876 44.41 MNPHFNSLSITTTTSSPIDLTIIPFQPSSTSSFDDSSLSNPRRPRKKRSRTQTHDPHHYSTLLTTTSKPKYTKKPDPNAPKITRPCTECGKKFWSDKALFGHMRCHPERQWRGIIPPINYRRPVSVSPNFSPNVERSSSSFTEEDQDIANSLLMLANGPNFSISRVSDSRFECSSCKKVFGSHQALGGHRASHKNVRGCFAMARSDEEETEDEITLFGDFGRHERSFNLENEMSMMILGTENHKKRFQWENNAATDQERLVNLDLNLPAPLEDDSSSSYSSSLTLDLRLGL* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4288939 4289814 - Chy1G006000.1 Chy01g00600 217781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00600 291 MobiDBLite consensus disorder prediction 56 72 - -
Chy01g00600 291 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Chy01g00600 291 SMART c2h2final6 84 106 IPR013087 -
Chy01g00600 291 SMART c2h2final6 171 193 IPR013087 -
Chy01g00600 291 MobiDBLite consensus disorder prediction 29 81 - -
Chy01g00600 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Chy01g00600 291 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 16 291 - -
Chy01g00600 291 SUPERFAMILY beta-beta-alpha zinc fingers 85 193 IPR036236 -
Chy01g00600 291 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Chy01g00600 291 Pfam C2H2-type zinc finger 85 108 - -
Chy01g00600 291 Pfam C2H2-type zinc finger 170 194 - -
Chy01g00600 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Chy01g00600 291 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 16 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00600 Chy-Chr1:4288939 Chy06g00034 Chy-Chr6:260820 4.60E-12 dispersed
Chy06g01936 Chy-Chr6:23279618 Chy01g00600 Chy-Chr1:4288939 1.99E-13 dispersed
Chy01g00600 Chy-Chr1:4288939 Chy12g01512 Chy-Chr12:18930179 1.05E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17283 PF13912 zf-C2H2_6 7.20E-10 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00600 - - csv:105436224 543.502