Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g00602 ATGGGTGCCGACGGTGATTCCAGCGAGCACCGGGTTGATGGCGATGCTGAAGAAGGAGGAGTTAGTGTTACAGTTAACATTCGATGTTCTAATGGGTCGAAATTTTCCGTCACCACGAGTCTGGACTCTACGGTTGCGACATTCAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAGCAGCGCTTGATCTACAAGGGTCGCATCTTAAAGGACGATCAGACTTTAGTTAGTTATGGTTTACAGGCAGATCACACTATTCACATGGTTCGTGGTTTTGCCCAAGCTTCATCAACACCCTCTGCGCCTGCTTCTAACGTTAATACTAGAAGTTCTGACACTGCTCCTGGAGTCACAAGAGGTGTTGGTTCTAACGAGAGTGGTGCTTTTGGAAATGGTGGCCTTGGTGCGTCATTATTTCCTGGACTGGGTTTCAATCCTCTTGGTGGAGGTGGAGCTGGACTTCCTGAGTTTGAGCAAGTGCAACAACAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATACAGAATTTGATGAATAACCCTGACTTGATGCGAACCTTAATTATGAGCAATCCTCAGATGCGGGATATTATTGACAGGAACCCAGAGCTTGCTCATATACTAAATGACCCTGGTATCCTTCGACAGACATTAGAGGCTGCAAGGAATCCTGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCAATGAGTAACATTGAATCTTCTCCCGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTCCAGGAGCCATTTCTAAATGCAACCACAATGGCTGGAAATGCTGGAAATGATTCGAGTTCAAACCCATTTGCTGCTCTCTTGGCAAACCAAGGAGGTGCACAAGCGAGAAATGAGTCCAATAATTCAACTACAGGATCAGAAACAACAGGAAATGCTGCTCCGAATACAAATCCACTTCCTAATCCCTGGGGAGGAACTCAGACTACAACCACACAGCCTACTCCAGCTGGTGATACAAGGGCTCCTGGTATTGGGGGTTTAGGAGGGGCTGGTCGTACAAATGTGGATCGTTTTGCTGGTGCTGTGCCAGACCCAGCTCAGTTGAATCAGTTTCTGCAAAACCCAGCTATTTCACAGATGATGCAGAGTCTGCTCTCCAATCCTCAGTATATGAATCAAATCCTCAATCTCAATCCACAGCTACGAAGTATGGTTGATATGAATCCTCAATTAAGAGAGATGATGCAAAATCCAGAGTTTGTTCGCCAATTAACTAATCCTGAGATGATGCAGCAAATGCTATCAATTCAGCAGTCCCTCCTCTCTTCCTTGAATCGACAGCCATCGTCTCAAGATGCTGCTCAAACAGGTGCTGCAGCAGGTGTTCCTAACACTGCTGGATTAGAGATGTTAATGAACCTGTTTGGTGGACTCGGTGCTGGCGGTTTGGCTGCCCCGCACAATCCCAATGTACCCCCAGAAGAACTATACGCAACTCAACTTTCACAGCTCCAAGAGATGGGTTTCTTTGACACTCAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGGAACGTCCATGCTGCTGTGGAGCGACTGCTGGGAAATCTCGGGCAGTAA 1641 46.31 MGADGDSSEHRVDGDAEEGGVSVTVNIRCSNGSKFSVTTSLDSTVATFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPSAPASNVNTRSSDTAPGVTRGVGSNESGAFGNGGLGASLFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDSSSNPFAALLANQGGAQARNESNNSTTGSETTGNAAPNTNPLPNPWGGTQTTTTQPTPAGDTRAPGIGGLGGAGRTNVDRFAGAVPDPAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSIQQSLLSSLNRQPSSQDAAQTGAAAGVPNTAGLEMLMNLFGGLGAGGLAAPHNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4295745 4299716 + Chy1G006020.1 Chy01g00602 217783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g00602 546 SUPERFAMILY UBA-like 500 542 IPR009060 GO:0005515
Chy01g00602 546 MobiDBLite consensus disorder prediction 297 355 - -
Chy01g00602 546 Gene3D - 195 253 - -
Chy01g00602 546 PANTHER UBIQUILIN 1 546 - -
Chy01g00602 546 CDD Ubl_Dsk2p_like 23 95 - -
Chy01g00602 546 SMART ubq_7 23 94 IPR000626 GO:0005515
Chy01g00602 546 Pfam Ubiquitin family 25 92 IPR000626 GO:0005515
Chy01g00602 546 Gene3D - 486 545 - -
Chy01g00602 546 Pfam UBA/TS-N domain 504 540 IPR015940 -
Chy01g00602 546 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 499 543 IPR015940 -
Chy01g00602 546 ProSiteProfiles Ubiquitin domain profile. 23 92 IPR000626 GO:0005515
Chy01g00602 546 CDD UBA_PLICs 504 542 - -
Chy01g00602 546 MobiDBLite consensus disorder prediction 297 344 - -
Chy01g00602 546 SMART CBM 372 401 IPR006636 -
Chy01g00602 546 SMART CBM 200 239 IPR006636 -
Chy01g00602 546 SMART CBM 148 187 IPR006636 -
Chy01g00602 546 SMART CBM 405 440 IPR006636 -
Chy01g00602 546 MobiDBLite consensus disorder prediction 99 128 - -
Chy01g00602 546 MobiDBLite consensus disorder prediction 99 123 - -
Chy01g00602 546 Gene3D - 9 107 - -
Chy01g00602 546 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 546 - -
Chy01g00602 546 SMART uba_6 504 542 IPR015940 -
Chy01g00602 546 PRINTS Ubiquitin signature 54 74 IPR019956 -
Chy01g00602 546 PRINTS Ubiquitin signature 75 96 IPR019956 -
Chy01g00602 546 SUPERFAMILY Ubiquitin-like 20 107 IPR029071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g00602 K04523 UBQLN, DSK2; ubiquilin - csv:101210644 941.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00602 Chy-Chr1:4295745 Chy06g02275 Chy-Chr6:26690443 0 dispersed
Chy01g00602 Chy-Chr1:4295745 Chy02g00381 Chy-Chr2:2432037 7.25E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01154 . . . . Bpe15g00787 . . Bma08g00719 . . . Cma11g01337 . . . . . . . . . . . . . . . . . . . . . Chy01g00602 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy01g00602 Chy_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0